Variant report

Variant	rs34704538
Chromosome Location	chr5:164779404-164779405
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1368416	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs36109804	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4323253	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027138	chr5:164563093-164852655	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537937	chr5:164563093-164852655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1028006	chr5:164563293-164852516	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv537938	chr5:164563293-164852516	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv883093	chr5:164685326-164931799	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:164777200-164787200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr5:164778400-164779600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr5:164778400-164779800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr5:164778400-164780400	Enhancers	Brain Germinal Matrix	brain
5	chr5:164778600-164779600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr5:164778800-164779600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr5:164779000-164779800	Enhancers	Ovary	ovary
8	chr5:164779200-164779600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr5:164779200-164780000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr5:164779400-164780400	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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