Variant report

Variant	rs34706296
Chromosome Location	chr7:107395242-107395243
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:38473717..38475505-chr7:107393558..107396163,2	MCF-7	breast:
2	chr7:107385325..107387312-chr7:107394099..107396119,2	MCF-7	breast:
3	chr7:107395182..107395775-chr7:107515028..107515677,3	MCF-7	breast:
4	chr7:107395099..107395698-chr7:107515175..107515699,2	MCF-7	breast:
5	chr7:107395049..107395744-chr7:107519460..107520136,2	K562	blood:
6	chr7:107395066..107395626-chr7:107519807..107520389,2	MCF-7	breast:
7	chr7:107394915..107397189-chr7:107455555..107458262,2	K562	blood:

Variant related genes	Relation type
ENSG00000131759	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs34405835	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1025008	chr7:107333739-107534235	Enhancers Active TSS Strong transcription Genic enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107385400-107398600	Weak transcription	Esophagus	oesophagus
2	chr7:107385400-107400600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:107386000-107397200	Weak transcription	Right Ventricle	heart
4	chr7:107386000-107398800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:107386200-107401000	Weak transcription	Stomach Mucosa	stomach
6	chr7:107386400-107398000	Weak transcription	Fetal Heart	heart
7	chr7:107386400-107398600	Weak transcription	Aorta	Aorta
8	chr7:107386400-107398600	Weak transcription	Gastric	stomach
9	chr7:107386400-107398600	Weak transcription	Pancreas	Pancrea
10	chr7:107386400-107398800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr7:107386600-107395400	Weak transcription	Brain Hippocampus Middle	brain
12	chr7:107386600-107396000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr7:107386600-107397400	Weak transcription	Rectal Smooth Muscle	rectum
14	chr7:107386600-107398400	Weak transcription	HSMMtube	muscle
15	chr7:107386600-107398600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr7:107386600-107398600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr7:107386600-107398600	Weak transcription	Spleen	Spleen
18	chr7:107386600-107398800	Weak transcription	Fetal Brain Male	brain
19	chr7:107387600-107401000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr7:107387600-107402400	Strong transcription	HSMM	muscle
21	chr7:107387800-107401000	Strong transcription	K562	blood
22	chr7:107387800-107401600	Strong transcription	Primary hematopoietic stem cells	blood
23	chr7:107388000-107402000	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr7:107388200-107401000	Strong transcription	HUES6 Cell Line	embryonic stem cell
25	chr7:107388600-107399000	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr7:107388600-107401000	Strong transcription	Hela-S3	cervix
27	chr7:107388600-107401800	Strong transcription	HUES64 Cell Line	embryonic stem cell
28	chr7:107388800-107401400	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr7:107388800-107401600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
30	chr7:107388800-107401600	Strong transcription	Primary B cells from peripheral blood	blood
31	chr7:107388800-107402800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr7:107389000-107401200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr7:107389200-107399800	Strong transcription	HepG2	liver
34	chr7:107389200-107401000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr7:107389200-107401400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr7:107389200-107401400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr7:107389200-107401400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr7:107389200-107401400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr7:107389200-107401600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr7:107389200-107401600	Strong transcription	HMEC	breast
41	chr7:107389400-107395600	Strong transcription	Stomach Smooth Muscle	stomach
42	chr7:107389400-107400400	Strong transcription	Osteobl	bone
43	chr7:107389400-107400800	Strong transcription	NHDF-Ad	bronchial
44	chr7:107389400-107401200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
45	chr7:107389400-107401200	Strong transcription	Adipose Nuclei	Adipose
46	chr7:107389400-107401200	Strong transcription	Duodenum Mucosa	Duodenum
47	chr7:107389400-107401600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr7:107389400-107401600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr7:107389400-107401600	Strong transcription	NH-A	brain
50	chr7:107389400-107401800	Strong transcription	Placenta	Placenta

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