Variant report

Variant	rs34708505
Chromosome Location	chr3:46322580-46322581
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs36118141	0.81[EUR][1000 genomes]
rs41276529	0.81[EUR][1000 genomes]
rs4683194	0.81[EUR][1000 genomes]
rs4683199	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6441950	0.81[EUR][1000 genomes]
rs6788849	0.80[EUR][1000 genomes]
rs6810232	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7371987	0.81[EUR][1000 genomes]
rs9839623	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9840204	0.81[EUR][1000 genomes]
rs9877860	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46317600-46324600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
2	chr3:46317600-46329200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr3:46317800-46329200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr3:46318000-46331400	Enhancers	Primary T cells fromperipheralblood	blood
5	chr3:46318800-46327000	Weak transcription	Spleen	Spleen
6	chr3:46319400-46324200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr3:46320400-46322600	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr3:46320400-46322600	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr3:46320400-46322600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr3:46320600-46322600	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr3:46320600-46322600	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr3:46320800-46322600	Enhancers	GM12878-XiMat	blood
13	chr3:46321400-46327800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr3:46322000-46324000	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr3:46322200-46329200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr3:46322400-46323400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr3:46322400-46323400	Weak transcription	Duodenum Mucosa	Duodenum
18	chr3:46322400-46324600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr3:46322400-46324800	Weak transcription	Primary T cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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