Variant report

Variant	rs34727536
Chromosome Location	chr4:100783377-100783378
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF2	chr4:100783316-100783457	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:100774002..100776880-chr4:100781292..100784858,3	MCF-7	breast:
2	chr4:100780796..100784092-chr4:100868274..100872206,3	K562	blood:

Variant related genes	Relation type
DAPP1	TF binding region
ENSG00000245322	Chromatin interaction
ENSG00000164032	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520074	chr4:100782043-100784980	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100761000-100801200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr4:100768400-100799000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr4:100777600-100787400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr4:100777600-100800800	Weak transcription	Thymus	Thymus
5	chr4:100777800-100799200	Weak transcription	Fetal Thymus	thymus
6	chr4:100777800-100801000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr4:100778000-100786000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr4:100778000-100792000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr4:100778000-100798600	Weak transcription	Duodenum Mucosa	Duodenum
10	chr4:100778000-100800200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr4:100778200-100798200	Weak transcription	Placenta	Placenta
12	chr4:100778400-100789600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr4:100778400-100800600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr4:100778600-100786000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr4:100779400-100784400	Weak transcription	Fetal Lung	lung
16	chr4:100780000-100788200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr4:100780200-100783600	Strong transcription	NHEK	skin
18	chr4:100780400-100783600	Strong transcription	Primary T cells from cord blood	blood
19	chr4:100781200-100784800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr4:100781200-100789600	Weak transcription	Gastric	stomach
21	chr4:100781200-100791800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr4:100781200-100800800	Weak transcription	Esophagus	oesophagus
23	chr4:100781200-100800800	Weak transcription	Spleen	Spleen
24	chr4:100781200-100801000	Weak transcription	Pancreas	Pancrea
25	chr4:100781400-100795800	Strong transcription	Primary B cells from cord blood	blood
26	chr4:100782000-100783600	Genic enhancers	Primary T helper cells PMA-I stimulated	--
27	chr4:100782400-100783400	Genic enhancers	Primary hematopoietic stem cells	blood
28	chr4:100782400-100783400	Enhancers	Pancreatic Islets	Pancreatic Islet
29	chr4:100782400-100783600	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr4:100782600-100790800	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr4:100782800-100783800	Enhancers	Primary neutrophils fromperipheralblood	blood
32	chr4:100782800-100792200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr4:100782800-100793400	Strong transcription	GM12878-XiMat	blood
34	chr4:100783000-100783400	Enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr4:100783000-100791000	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr4:100783000-100793400	Strong transcription	Primary monocytes fromperipheralblood	blood
37	chr4:100783000-100793600	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr4:100783000-100796000	Strong transcription	Primary B cells from peripheral blood	blood
39	chr4:100783200-100783400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr4:100783200-100783400	Enhancers	Colon Smooth Muscle	Colon
41	chr4:100783200-100784200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr4:100783200-100785000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr4:100783200-100785200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr4:100783200-100787200	Weak transcription	HMEC	breast
45	chr4:100783200-100789000	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr4:100783200-100793000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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