Variant report

Variant	rs34735556
Chromosome Location	chr3:52611554-52611555
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11717749	0.86[AFR][1000 genomes]
rs13059141	0.86[AFR][1000 genomes]
rs13063138	0.92[EUR][1000 genomes]
rs13066389	0.82[ASN][1000 genomes]
rs13066644	1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs13086936	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13087538	0.91[EUR][1000 genomes]
rs13099479	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13326165	0.82[ASN][1000 genomes]
rs17331178	0.86[AFR][1000 genomes]
rs34131802	0.82[EUR][1000 genomes]
rs34182518	0.86[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs35198201	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35225119	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35272104	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35325270	0.82[ASN][1000 genomes]
rs35371456	0.86[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs35911561	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs45556336	0.88[EUR][1000 genomes]
rs4687545	0.82[ASN][1000 genomes]
rs67749743	0.82[ASN][1000 genomes]
rs71299610	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs71299613	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs71299614	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs758802	0.82[ASN][1000 genomes]
rs7614424	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv984563	chr3:52516115-52867075	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs34735556	TMEM110	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:52572400-52633000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:52574400-52623800	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr3:52576800-52625600	Strong transcription	Fetal Thymus	thymus
4	chr3:52578200-52625600	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr3:52585800-52627400	Weak transcription	Fetal Heart	heart
6	chr3:52587200-52719200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:52589600-52611600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:52591000-52688000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr3:52592200-52719200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr3:52594400-52614800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr3:52595200-52631000	Weak transcription	Stomach Mucosa	stomach
12	chr3:52596000-52611800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr3:52596000-52612400	Weak transcription	Gastric	stomach
14	chr3:52596000-52622800	Weak transcription	K562	blood
15	chr3:52596000-52624200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr3:52596400-52611800	Weak transcription	Spleen	Spleen
17	chr3:52597400-52611600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr3:52597600-52611800	Weak transcription	Pancreas	Pancrea
19	chr3:52597600-52612000	Weak transcription	Brain Substantia Nigra	brain
20	chr3:52597600-52612000	Weak transcription	Right Ventricle	heart
21	chr3:52597600-52612400	Weak transcription	Colonic Mucosa	Colon
22	chr3:52597600-52612600	Weak transcription	Esophagus	oesophagus
23	chr3:52597600-52612600	Weak transcription	Rectal Smooth Muscle	rectum
24	chr3:52597800-52611800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr3:52597800-52612400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr3:52597800-52612600	Weak transcription	Small Intestine	intestine
27	chr3:52598200-52612400	Weak transcription	HMEC	breast
28	chr3:52598200-52612600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr3:52598200-52625200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr3:52598400-52611800	Weak transcription	Fetal Brain Male	brain
31	chr3:52600600-52615400	Strong transcription	Duodenum Mucosa	Duodenum
32	chr3:52602200-52617400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr3:52602200-52623400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr3:52602600-52624400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr3:52603000-52614200	Strong transcription	Thymus	Thymus
36	chr3:52603200-52617400	Strong transcription	Fetal Muscle Trunk	muscle
37	chr3:52603400-52625400	Strong transcription	Fetal Muscle Leg	muscle
38	chr3:52603600-52623800	Strong transcription	Liver	Liver
39	chr3:52603800-52616000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr3:52603800-52625400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr3:52604000-52614200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr3:52604000-52623400	Strong transcription	Fetal Intestine Large	intestine
43	chr3:52606000-52615600	Strong transcription	Primary T helper cells fromperipheralblood	blood
44	chr3:52606000-52623400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr3:52606200-52625400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr3:52606400-52623600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr3:52606600-52614000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
48	chr3:52606600-52623800	Strong transcription	Primary neutrophils fromperipheralblood	blood
49	chr3:52606600-52625400	Strong transcription	Dnd41	blood
50	chr3:52606800-52614000	Strong transcription	HUES48 Cell Line	embryonic stem cell

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