Variant report

Variant	rs34739503
Chromosome Location	chr7:150786151-150786152
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:150786054-150787669	K562	blood:	n/a	n/a
2	POLR2A	chr7:150785837-150786651	U87	brain:	n/a	n/a
3	STAT5A	chr7:150785870-150786434	GM12878	blood:	n/a	chr7:150786159-150786171
4	POLR2A	chr7:150785323-150786952	U87	brain:	n/a	n/a
5	POLR2A	chr7:150782028-150787573	IMR90	lung:	n/a	n/a
6	MAZ	chr7:150783896-150786994	IMR90	lung:	n/a	chr7:150784860-150784870 chr7:150785730-150785740 chr7:150784708-150784715
7	TAF1	chr7:150786116-150786848	PFSK-1	brain:	n/a	n/a
8	RUNX3	chr7:150785355-150786789	GM12878	blood:	n/a	chr7:150786634-150786651
9	POLR2A	chr7:150785849-150786978	U87	brain:	n/a	n/a
10	POLR2A	chr7:150785968-150786221	HUVEC	blood vessel:	n/a	n/a
11	WRNIP1	chr7:150784641-150786174	GM12878	blood:	n/a	n/a
12	RELA	chr7:150785599-150786333	GM12891	blood:	n/a	n/a
13	STAT3	chr7:150786036-150786909	MCF10A-Er-Src	breast:	n/a	chr7:150786159-150786171
14	FOXM1	chr7:150785764-150786183	GM12878	blood:	n/a	n/a
15	POLR2A	chr7:150782169-150787040	HUVEC	blood vessel:	n/a	n/a
16	GABPA	chr7:150785739-150786413	HL-60	blood:	n/a	n/a
17	RAD21	chr7:150786148-150786656	IMR90	lung:	n/a	chr7:150786159-150786169 chr7:150786170-150786184
18	POLR2A	chr7:150782684-150787036	HUVEC	blood vessel:	n/a	n/a
19	KAP1	chr7:150786130-150787050	U2OS	brain:	n/a	n/a
20	ATF2	chr7:150785837-150786277	GM12878	blood:	n/a	n/a
21	POLR2A	chr7:150784175-150786998	HUVEC	blood vessel:	n/a	n/a
22	FOS	chr7:150785983-150786950	HUVEC	blood vessel:	n/a	n/a
23	EBF1	chr7:150785892-150786238	GM12878	blood:	n/a	n/a
24	POLR2A	chr7:150784530-150786963	HUVEC	blood vessel:	n/a	n/a
25	RELA	chr7:150785811-150786323	GM19099	blood:	n/a	n/a
26	RUNX3	chr7:150785555-150786873	GM12878	blood:	n/a	chr7:150786634-150786651
27	POLR2A	chr7:150785329-150786878	U87	brain:	n/a	n/a
28	ZNF263	chr7:150784035-150787204	HEK293-T-REx	kidney:	n/a	chr7:150785819-150785828 chr7:150785070-150785079
29	POLR2A	chr7:150784194-150786955	HUVEC	blood vessel:	n/a	n/a
30	KAP1	chr7:150786052-150786900	HEK293	kidney:	n/a	n/a
31	PML	chr7:150784508-150786469	GM12878	blood:	n/a	n/a
32	RELA	chr7:150785835-150786156	GM10847	blood:	n/a	n/a
33	POLR2A	chr7:150785963-150786206	GM12878	blood:	n/a	n/a
34	POLR2A	chr7:150786040-150786190	MCF10A-Er-Src	breast:	n/a	n/a
35	SIN3A	chr7:150785889-150786659	H1-hESC	embryonic stem cell:	n/a	n/a
36	POLR2A	chr7:150785433-150786248	K562	blood:	n/a	n/a
37	RELA	chr7:150785836-150786172	GM18951	blood:	n/a	n/a
38	CHD1	chr7:150783491-150787518	IMR90	lung:	n/a	n/a
39	POLR2A	chr7:150786070-150786171	HepG2	liver:	n/a	n/a
40	GABPA	chr7:150785949-150786187	GM12878	blood:	n/a	n/a
41	MTA3	chr7:150783939-150786708	GM12878	blood:	n/a	n/a
42	POLR2A	chr7:150786148-150787003	PFSK-1	brain:	n/a	n/a
43	BCLAF1	chr7:150785743-150786289	GM12878	blood:	n/a	chr7:150786161-150786174
44	POLR2A	chr7:150786147-150786179	ProgFib	skin:	n/a	n/a
45	MXI1	chr7:150783932-150786716	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
AGAP3	TF binding region

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs35593494	0.92[AFR][1000 genomes]
rs35761234	0.92[AFR][1000 genomes]
rs60011103	0.92[AFR][1000 genomes]
rs73476739	1.00[AFR][1000 genomes]
rs73476747	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1821419	chr7:150593315-150974269	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	128 gene(s)	inside rSNPs	diseases
2	nsv889465	chr7:150640285-150800823	Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	nsv1028645	chr7:150643928-150806534	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
4	nsv539198	chr7:150643928-150879259	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
5	nsv889476	chr7:150729212-150951819	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	120 gene(s)	inside rSNPs	diseases
6	nsv1031733	chr7:150730999-150790517	Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
7	nsv889477	chr7:150731698-150837529	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
8	nsv889478	chr7:150732812-150889527	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
9	nsv831188	chr7:150735204-150912875	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
10	nsv889480	chr7:150736382-150797581	Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
11	nsv1028023	chr7:150738624-150790517	Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
12	nsv465214	chr7:150751590-150822192	Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
13	nsv609012	chr7:150751590-150822192	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
14	nsv609013	chr7:150751590-150832913	Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
15	nsv465215	chr7:150762871-150825087	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
16	nsv609014	chr7:150762871-150825087	Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
17	nsv889481	chr7:150766799-150837529	Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
18	nsv889482	chr7:150766799-150851566	Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
19	nsv889483	chr7:150773165-150787046	Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	26 gene(s)	inside rSNPs	diseases
20	nsv889484	chr7:150774308-150787046	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	26 gene(s)	inside rSNPs	diseases
21	nsv889485	chr7:150774308-150788304	Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	27 gene(s)	inside rSNPs	diseases
22	nsv889486	chr7:150775306-150891641	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150782600-150786600	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr7:150783000-150786400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr7:150784000-150787000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
4	chr7:150784000-150787200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr7:150784000-150787200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr7:150784000-150787400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr7:150784200-150786600	Flanking Active TSS	Primary hematopoietic stem cells	blood
8	chr7:150784200-150786600	Flanking Active TSS	Fetal Muscle Trunk	muscle
9	chr7:150784200-150787200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
10	chr7:150784200-150787400	Flanking Active TSS	Stomach Smooth Muscle	stomach
11	chr7:150784600-150786400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr7:150784600-150786800	Flanking Active TSS	HMEC	breast
13	chr7:150784600-150786800	Flanking Active TSS	NH-A	brain
14	chr7:150784600-150787000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
15	chr7:150784800-150786200	Flanking Active TSS	Fetal Brain Male	brain
16	chr7:150784800-150786200	Flanking Active TSS	Placenta	Placenta
17	chr7:150784800-150786400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr7:150784800-150786400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr7:150784800-150786400	Flanking Active TSS	GM12878-XiMat	blood
20	chr7:150784800-150787000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
21	chr7:150784800-150787000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr7:150784800-150787000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr7:150784800-150787000	Flanking Active TSS	Osteobl	bone
24	chr7:150784800-150787200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr7:150784800-150787200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr7:150784800-150787200	Flanking Active TSS	Adipose Nuclei	Adipose
27	chr7:150784800-150787200	Flanking Active TSS	Brain Anterior Caudate	brain
28	chr7:150784800-150787200	Flanking Active TSS	Brain Cingulate Gyrus	brain
29	chr7:150784800-150787200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
30	chr7:150784800-150787200	Flanking Active TSS	Colon Smooth Muscle	Colon
31	chr7:150784800-150787200	Flanking Active TSS	HUVEC	blood vessel
32	chr7:150784800-150787400	Flanking Active TSS	Brain Hippocampus Middle	brain
33	chr7:150785000-150786200	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
34	chr7:150785000-150786400	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
35	chr7:150785000-150786400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
36	chr7:150785000-150786400	Flanking Active TSS	Brain Germinal Matrix	brain
37	chr7:150785000-150786600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
38	chr7:150785000-150786800	Flanking Active TSS	Liver	Liver
39	chr7:150785000-150786800	Flanking Active TSS	Brain Angular Gyrus	brain
40	chr7:150785000-150786800	Transcr. at gene 5' and 3'	Fetal Stomach	stomach
41	chr7:150785000-150786800	Enhancers	Dnd41	blood
42	chr7:150785000-150787000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr7:150785000-150787000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
44	chr7:150785000-150787000	Flanking Active TSS	HepG2	liver
45	chr7:150785000-150787000	Flanking Active TSS	NHEK	skin
46	chr7:150785000-150787200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr7:150785000-150787200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr7:150785000-150787200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
49	chr7:150785000-150787200	Flanking Active TSS	Rectal Smooth Muscle	rectum
50	chr7:150785000-150787400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin

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