Variant report

Variant	rs34742316
Chromosome Location	chr8:126626111-126626112
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:126614837..126616782-chr8:126623338..126626219,3	MCF-7	breast:
2	chr8:126442594..126445786-chr8:126623809..126626952,4	MCF-7	breast:
3	chr8:126623702..126626459-chr8:126629825..126632775,2	K562	blood:
4	chr8:126619990..126624184-chr8:126625667..126627988,3	K562	blood:
5	chr8:126624246..126627028-chr8:126627335..126628862,2	MCF-7	breast:
6	chr8:126442492..126444588-chr8:126626090..126628440,2	MCF-7	breast:
7	chr8:126619050..126624593-chr8:126625487..126628558,5	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TRIB1-12	chr8:126625712-126626709	NONHSAT128977

No data

Variant related genes	Relation type
ENSG00000173334	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13248155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13259326	0.93[AFR][1000 genomes]
rs13259809	1.00[AFR][1000 genomes]
rs66733819	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891437	chr8:126470817-126629328	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv6377	chr8:126579620-126639253	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv38	chr8:126593465-126639253	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3376403	chr8:126624370-126628568	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126618800-126627800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:126620200-126627800	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr8:126622200-126626400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr8:126622200-126626600	Weak transcription	Spleen	Spleen
5	chr8:126624000-126628200	Enhancers	Fetal Muscle Leg	muscle
6	chr8:126624600-126628000	Enhancers	Placenta	Placenta
7	chr8:126625000-126626200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr8:126625200-126626200	Enhancers	NHDF-Ad	bronchial
9	chr8:126625400-126626200	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr8:126625400-126626200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr8:126625400-126626200	Enhancers	Brain Substantia Nigra	brain
12	chr8:126625400-126626600	Enhancers	Fetal Muscle Trunk	muscle
13	chr8:126625400-126626600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
14	chr8:126625400-126627200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr8:126625400-126627200	Enhancers	Adipose Nuclei	Adipose
16	chr8:126625600-126626200	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr8:126625600-126626200	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr8:126625600-126626400	Enhancers	Fetal Thymus	thymus
19	chr8:126625600-126627400	Enhancers	Fetal Lung	lung
20	chr8:126625600-126627600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr8:126625600-126627800	Enhancers	Fetal Brain Male	brain
22	chr8:126625800-126626200	Enhancers	Pancreas	Pancrea
23	chr8:126625800-126626400	Enhancers	Brain Hippocampus Middle	brain
24	chr8:126625800-126626400	Enhancers	Fetal Brain Female	brain
25	chr8:126625800-126626600	Bivalent Enhancer	Fetal Heart	heart
26	chr8:126625800-126626800	Enhancers	Lung	lung
27	chr8:126625800-126626800	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
28	chr8:126626000-126626600	Enhancers	HSMM	muscle
29	chr8:126626000-126626600	Enhancers	HSMMtube	muscle
30	chr8:126626000-126626600	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr8:126626000-126627000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr8:126626000-126627000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
33	chr8:126626000-126627200	Enhancers	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links