Variant report

Variant	rs34748137
Chromosome Location	chr3:99932118-99932119
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17279479	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4928120	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62281674	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817478	chr3:99474086-99955548	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv916476	chr3:99478229-100124625	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99917800-99933000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:99929600-99935200	Weak transcription	Aorta	Aorta
3	chr3:99929800-99932600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:99929800-99935200	Weak transcription	HSMMtube	muscle
5	chr3:99929800-99935400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr3:99930000-99932200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr3:99930000-99932800	Weak transcription	HepG2	liver
8	chr3:99930000-99935200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr3:99930200-99932600	Weak transcription	NH-A	brain
10	chr3:99930400-99932600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:99930600-99932800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr3:99930600-99933000	Weak transcription	Colon Smooth Muscle	Colon
13	chr3:99930600-99935000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr3:99930600-99935200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr3:99930600-99937400	Weak transcription	Psoas Muscle	Psoas
16	chr3:99930800-99932400	Weak transcription	NHDF-Ad	bronchial
17	chr3:99930800-99933000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr3:99930800-99933600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr3:99930800-99935200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr3:99931200-99932400	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr3:99931200-99938000	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr3:99932000-99932400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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