Variant report

Variant	rs34748213
Chromosome Location	chr1:57350959-57350960
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12401558	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12406202	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1885002	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1887977	0.87[AMR][1000 genomes]
rs2269114	0.81[AMR][1000 genomes]
rs2269115	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2269118	0.85[AMR][1000 genomes]
rs2269119	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2269121	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2300954	0.87[AMR][1000 genomes]
rs2300955	0.87[AMR][1000 genomes]
rs57210737	0.87[AMR][1000 genomes]
rs58983677	0.81[AMR][1000 genomes]
rs6681119	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6694643	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6697228	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72670317	0.86[AMR][1000 genomes]
rs72670319	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv508215	chr1:57319460-57351150	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57344000-57353600	Strong transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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