Variant report

Variant	rs34753760
Chromosome Location	chr4:91762142-91762143
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr4:91761988-91762317	MCF10A-Er-Src	breast:	n/a	n/a
2	TCF12	chr4:91761961-91762511	MCF-7	breast:	n/a	n/a
3	GATA3	chr4:91761926-91762446	SK-N-SH	brain:	n/a	chr4:91762262-91762269 chr4:91762262-91762269 chr4:91762260-91762269 chr4:91762260-91762269 chr4:91762260-91762270 chr4:91762262-91762269
4	STAT3	chr4:91761772-91762359	MCF10A-Er-Src	breast:	n/a	n/a
5	GATA3	chr4:91761885-91762536	SK-N-SH	brain:	n/a	chr4:91762262-91762269 chr4:91762262-91762269 chr4:91762260-91762269 chr4:91762260-91762269 chr4:91762260-91762270 chr4:91762262-91762269
6	TEAD4	chr4:91761984-91762421	MCF-7	breast:	n/a	chr4:91762382-91762391
7	CEBPB	chr4:91761937-91762249	K562	blood:	n/a	chr4:91762089-91762102 chr4:91762089-91762102 chr4:91762086-91762103 chr4:91762089-91762100
8	GATA3	chr4:91761987-91762540	MCF-7	breast:	n/a	chr4:91762262-91762269 chr4:91762262-91762269 chr4:91762260-91762269 chr4:91762260-91762269 chr4:91762260-91762270 chr4:91762262-91762269
9	CEBPB	chr4:91761916-91762272	HepG2	liver:	n/a	chr4:91762089-91762102 chr4:91762089-91762102 chr4:91762086-91762103 chr4:91762089-91762100
10	CEBPB	chr4:91761925-91762277	IMR90	lung:	n/a	chr4:91762089-91762102 chr4:91762089-91762102 chr4:91762086-91762103 chr4:91762089-91762100
11	REST	chr4:91761958-91762345	MCF-7	breast:	n/a	n/a
12	GATA3	chr4:91762044-91762395	MCF-7	breast:	n/a	chr4:91762262-91762269 chr4:91762262-91762269 chr4:91762260-91762269 chr4:91762260-91762269 chr4:91762260-91762270 chr4:91762262-91762269
13	EP300	chr4:91761977-91762435	MCF-7	breast:	n/a	chr4:91762090-91762104
14	MYC	chr4:91761982-91762220	MCF10A-Er-Src	breast:	n/a	n/a
15	MAFF	chr4:91761978-91762252	HepG2	liver:	n/a	chr4:91762203-91762217
16	CEBPB	chr4:91761890-91762246	A549	lung:	n/a	chr4:91762089-91762102 chr4:91762089-91762102 chr4:91762086-91762103 chr4:91762089-91762100
17	FOXM1	chr4:91761966-91762448	MCF-7	breast:	n/a	n/a
18	CEBPB	chr4:91761875-91762243	A549	lung:	n/a	chr4:91762089-91762102 chr4:91762089-91762102 chr4:91762086-91762103 chr4:91762089-91762100
19	CEBPB	chr4:91761997-91762190	MCF-7	breast:	n/a	chr4:91762089-91762102 chr4:91762089-91762102 chr4:91762086-91762103 chr4:91762089-91762100
20	FOS	chr4:91761896-91762422	MCF10A-Er-Src	breast:	n/a	chr4:91762205-91762215 chr4:91762205-91762215 chr4:91762205-91762215 chr4:91762205-91762215
21	CEBPB	chr4:91761919-91762199	H1-hESC	embryonic stem cell:	n/a	chr4:91762089-91762102 chr4:91762089-91762102 chr4:91762086-91762103 chr4:91762089-91762100
22	STAT3	chr4:91761971-91762328	MCF10A-Er-Src	breast:	n/a	n/a
23	SIN3AK20	chr4:91761890-91762577	MCF-7	breast:	n/a	n/a
24	FOS	chr4:91761959-91762339	MCF10A-Er-Src	breast:	n/a	chr4:91762205-91762215 chr4:91762205-91762215 chr4:91762205-91762215 chr4:91762205-91762215
25	GATA3	chr4:91761882-91762464	MCF-7	breast:	n/a	chr4:91762262-91762269 chr4:91762262-91762269 chr4:91762260-91762269 chr4:91762260-91762269 chr4:91762260-91762270 chr4:91762262-91762269
26	FOS	chr4:91761945-91762368	MCF10A-Er-Src	breast:	n/a	chr4:91762205-91762215 chr4:91762205-91762215 chr4:91762205-91762215 chr4:91762205-91762215
27	SIN3AK20	chr4:91761858-91762414	MCF-7	breast:	n/a	n/a
28	EP300	chr4:91761944-91762226	Hela-S3	cervix:	n/a	chr4:91762090-91762104
29	MAFK	chr4:91762025-91762321	HepG2	liver:	n/a	chr4:91762207-91762216 chr4:91762200-91762220 chr4:91762203-91762217 chr4:91762204-91762214
30	STAT3	chr4:91761980-91762327	MCF10A-Er-Src	breast:	n/a	n/a
31	FOS	chr4:91761962-91762343	MCF10A-Er-Src	breast:	n/a	chr4:91762205-91762215 chr4:91762205-91762215 chr4:91762205-91762215 chr4:91762205-91762215
32	ZNF217	chr4:91762094-91762358	MCF-7	breast:	n/a	n/a
33	GATA3	chr4:91761718-91762536	MCF-7	breast:	n/a	chr4:91762262-91762269 chr4:91762262-91762269 chr4:91762260-91762269 chr4:91762260-91762269 chr4:91762260-91762270 chr4:91762262-91762269
34	TEAD4	chr4:91761927-91762492	MCF-7	breast:	n/a	chr4:91762382-91762391
35	MAFK	chr4:91762040-91762262	HepG2	liver:	n/a	chr4:91762207-91762216 chr4:91762200-91762220 chr4:91762203-91762217 chr4:91762204-91762214
36	CEBPB	chr4:91761850-91762384	MCF-7	breast:	n/a	chr4:91762089-91762102 chr4:91762089-91762102 chr4:91762352-91762369 chr4:91762086-91762103 chr4:91762089-91762100
37	STAT3	chr4:91761947-91762376	MCF10A-Er-Src	breast:	n/a	n/a
38	MAFK	chr4:91762035-91762305	Hela-S3	cervix:	n/a	chr4:91762207-91762216 chr4:91762200-91762220 chr4:91762203-91762217 chr4:91762204-91762214
39	CEBPB	chr4:91761911-91762286	Hela-S3	cervix:	n/a	chr4:91762089-91762102 chr4:91762089-91762102 chr4:91762086-91762103 chr4:91762089-91762100
40	STAT3	chr4:91761904-91762382	MCF10A-Er-Src	breast:	n/a	n/a
41	TCF12	chr4:91761800-91762573	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:91761570..91763712-chr4:91779440..91782222,2	MCF-7	breast:

Variant related genes	Relation type
TMSB4XP8	TF binding region

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17195440	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57906524	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62311115	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62311117	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62311120	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534470	chr4:91342219-91842807	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv428766	chr4:91618397-91768647	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv879553	chr4:91691313-91868576	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv879555	chr4:91743538-91967602	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv4422	chr4:91744177-91789188	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv491945	chr4:91753638-92240582	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91752400-91775000	Weak transcription	Pancreas	Pancrea
2	chr4:91754600-91771400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:91761400-91762400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr4:91761600-91764600	Enhancers	HMEC	breast
5	chr4:91761600-91764600	Enhancers	NHEK	skin
6	chr4:91761800-91762600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:91761800-91762600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr4:91761800-91763200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr4:91762000-91763800	Enhancers	HUVEC	blood vessel

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