Variant report

Variant	rs34757705
Chromosome Location	chr7:26392082-26392083
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:26229188..26231579-chr7:26391881..26395194,3	MCF-7	breast:
2	chr7:26241146..26243756-chr7:26390929..26393657,2	MCF-7	breast:
3	chr7:26385066..26388736-chr7:26388870..26392528,4	K562	blood:
4	chr7:26386222..26388194-chr7:26390840..26392963,3	MCF-7	breast:
5	chr7:26389556..26392091-chr7:26400125..26403853,4	K562	blood:

Variant related genes	Relation type
ENSG00000122566	Chromatin interaction
ENSG00000122565	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13239699	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13243639	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35070084	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35881454	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3801889	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs68058303	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021308	chr7:26116605-26419720	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26368800-26405000	Weak transcription	Placenta	Placenta
2	chr7:26372400-26405200	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr7:26375000-26414000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:26382600-26393400	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr7:26382800-26392800	Strong transcription	Primary B cells from cord blood	blood
6	chr7:26384600-26393000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr7:26384800-26409400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr7:26385200-26393000	Strong transcription	Primary B cells from peripheral blood	blood
9	chr7:26385600-26414200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:26386600-26405200	Weak transcription	Thymus	Thymus
11	chr7:26386800-26393200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr7:26386800-26395600	Weak transcription	Fetal Lung	lung
13	chr7:26387400-26409400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr7:26387800-26409400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr7:26388000-26409400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr7:26388200-26404600	Weak transcription	Dnd41	blood
17	chr7:26388200-26405000	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr7:26388400-26392200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr7:26388400-26397400	Weak transcription	Spleen	Spleen
20	chr7:26388600-26395400	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr7:26388600-26396600	Weak transcription	Fetal Thymus	thymus
22	chr7:26388600-26397800	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr7:26388800-26402600	Weak transcription	Liver	Liver
24	chr7:26388800-26405200	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr7:26389000-26393000	Weak transcription	HepG2	liver
26	chr7:26389000-26413200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr7:26389200-26393800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr7:26389200-26395400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr7:26389800-26402600	Weak transcription	Pancreas	Pancrea
30	chr7:26390000-26398800	Weak transcription	Primary hematopoietic stem cells	blood
31	chr7:26390000-26399000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr7:26390200-26395800	Weak transcription	Fetal Intestine Large	intestine
33	chr7:26390200-26405000	Weak transcription	Primary T cells from cord blood	blood
34	chr7:26390600-26398800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr7:26390600-26399000	Weak transcription	GM12878-XiMat	blood
36	chr7:26391200-26404600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr7:26391400-26396000	Weak transcription	Fetal Intestine Small	intestine
38	chr7:26392000-26404600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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