Variant report

Variant	rs34765260
Chromosome Location	chr1:186267784-186267785
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs71634157	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1004481	chr1:186095854-186750968	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv535223	chr1:186095854-186750968	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:186259000-186270400	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr1:186259600-186273600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr1:186259800-186268400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr1:186260000-186269400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr1:186260800-186269400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr1:186262400-186268800	Weak transcription	Primary T cells from cord blood	blood
7	chr1:186265200-186271200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr1:186265600-186279400	Weak transcription	A549	lung
9	chr1:186267000-186267800	Enhancers	Fetal Thymus	thymus
10	chr1:186267200-186268200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:186267200-186268400	Weak transcription	Hela-S3	cervix
12	chr1:186267200-186271600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr1:186267200-186281600	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr1:186267400-186268200	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr1:186267400-186269000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr1:186267400-186269200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr1:186267400-186271200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr1:186267400-186280400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr1:186267600-186267800	Flanking Active TSS	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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