Variant report

Variant	rs34766362
Chromosome Location	chr2:39345732-39345733
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:38976752..38978404-chr2:39344867..39346987,2	K562	blood:
2	chr2:39319265..39325749-chr2:39345590..39349573,11	MCF-7	breast:
3	chr2:39342488..39346158-chr2:39346528..39349240,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000225900	Chromatin interaction
ENSG00000115904	Chromatin interaction
ENSG00000115875	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs13005167	0.95[EUR][1000 genomes]
rs62142833	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755359	chr2:39169049-39417849	Strong transcription Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv873885	chr2:39200198-39573521	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv1010874	chr2:39255376-39604535	Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	nsv535649	chr2:39255376-39604535	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
5	nsv531346	chr2:39263225-39606367	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
6	nsv533348	chr2:39264345-39596169	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
7	nsv1014520	chr2:39270598-39596299	Enhancers Active TSS Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
8	nsv535650	chr2:39270598-39596299	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
9	nsv1008198	chr2:39271472-39364035	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
10	nsv1009379	chr2:39271472-39604535	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
11	nsv581493	chr2:39277851-39547575	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
12	nsv581494	chr2:39277851-39626388	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
13	nsv533456	chr2:39281834-39596298	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
14	nsv581495	chr2:39282079-39475205	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:39328000-39346800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:39330000-39346800	Weak transcription	Spleen	Spleen
3	chr2:39334600-39346000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr2:39334600-39346800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr2:39335200-39345800	Weak transcription	Brain Substantia Nigra	brain
6	chr2:39339800-39345800	Weak transcription	Pancreas	Pancrea
7	chr2:39339800-39346800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:39339800-39346800	Weak transcription	Esophagus	oesophagus
9	chr2:39339800-39346800	Weak transcription	Lung	lung
10	chr2:39340000-39345800	Weak transcription	Fetal Thymus	thymus
11	chr2:39340000-39346000	Weak transcription	Placenta	Placenta
12	chr2:39340600-39345800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr2:39340600-39346000	Weak transcription	Fetal Muscle Trunk	muscle
14	chr2:39342400-39346800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr2:39343000-39345800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr2:39343000-39346800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr2:39343400-39346000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr2:39344400-39346000	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
19	chr2:39344400-39346000	Enhancers	Small Intestine	intestine
20	chr2:39344400-39348600	Active TSS	GM12878-XiMat	blood
21	chr2:39344600-39345800	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr2:39344600-39345800	Weak transcription	Left Ventricle	heart
23	chr2:39344600-39346000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr2:39344600-39346000	Enhancers	Thymus	Thymus
25	chr2:39344800-39345800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr2:39344800-39345800	Enhancers	Primary T cells from cord blood	blood
27	chr2:39344800-39345800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
28	chr2:39344800-39345800	Enhancers	Right Ventricle	heart
29	chr2:39344800-39346000	Enhancers	Brain Hippocampus Middle	brain
30	chr2:39344800-39346000	Enhancers	Stomach Mucosa	stomach
31	chr2:39345000-39345800	Weak transcription	Fetal Muscle Leg	muscle
32	chr2:39345000-39346000	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr2:39345000-39346000	Enhancers	Primary neutrophils fromperipheralblood	blood
34	chr2:39345000-39346000	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr2:39345000-39346000	Flanking Active TSS	HepG2	liver
36	chr2:39345000-39347200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr2:39345000-39347200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr2:39345000-39347200	Flanking Active TSS	Adipose Nuclei	Adipose
39	chr2:39345000-39347200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
40	chr2:39345200-39345800	Enhancers	iPS-15b Cell Line	embryonic stem cell
41	chr2:39345200-39345800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr2:39345200-39345800	Flanking Active TSS	Brain Angular Gyrus	brain
43	chr2:39345200-39345800	Flanking Active TSS	Fetal Brain Male	brain
44	chr2:39345200-39345800	Enhancers	Fetal Kidney	kidney
45	chr2:39345200-39345800	Active TSS	HSMMtube	muscle
46	chr2:39345200-39346000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr2:39345200-39346000	Enhancers	iPS-18 Cell Line	embryonic stem cell
48	chr2:39345200-39346000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr2:39345200-39346000	Enhancers	Primary B cells from peripheral blood	blood
50	chr2:39345200-39346000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links