Variant report

Variant	rs34767236
Chromosome Location	chr14:70810569-70810570
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1060681	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11158858	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11626228	0.86[ASN][1000 genomes]
rs11626414	0.86[ASN][1000 genomes]
rs12433609	0.82[EUR][1000 genomes]
rs12590808	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12880777	0.86[ASN][1000 genomes]
rs12880929	0.81[EUR][1000 genomes]
rs17475516	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34511042	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34866539	0.86[ASN][1000 genomes]
rs3966033	0.83[EUR][1000 genomes]
rs8016418	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8019852	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902075	chr14:70612618-70919016	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70788200-70813600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr14:70792800-70825200	Weak transcription	NH-A	brain
3	chr14:70797600-70813000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr14:70798000-70817200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr14:70799800-70810600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr14:70799800-70811200	Weak transcription	Left Ventricle	heart
7	chr14:70799800-70811200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr14:70799800-70811400	Weak transcription	Lung	lung
9	chr14:70799800-70811600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr14:70799800-70812200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr14:70800000-70811400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr14:70800000-70825000	Weak transcription	HSMM	muscle
13	chr14:70800600-70821000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr14:70800800-70815000	Weak transcription	Right Ventricle	heart
15	chr14:70800800-70824800	Weak transcription	Rectal Smooth Muscle	rectum
16	chr14:70801200-70810800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr14:70801200-70810800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr14:70801200-70811200	Weak transcription	Thymus	Thymus
19	chr14:70801200-70811400	Weak transcription	Esophagus	oesophagus
20	chr14:70801200-70811600	Weak transcription	Pancreas	Pancrea
21	chr14:70801200-70815200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr14:70801200-70815800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr14:70801200-70822000	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr14:70801200-70824200	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr14:70801200-70825200	Weak transcription	Brain Cingulate Gyrus	brain
26	chr14:70801400-70811400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr14:70801400-70811600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr14:70801400-70812600	Weak transcription	HepG2	liver
29	chr14:70801400-70813000	Weak transcription	Duodenum Mucosa	Duodenum
30	chr14:70801800-70824400	Weak transcription	NHDF-Ad	bronchial
31	chr14:70802000-70824800	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr14:70802000-70824800	Weak transcription	Stomach Smooth Muscle	stomach
33	chr14:70802200-70812800	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr14:70802200-70813400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr14:70802200-70815200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr14:70802200-70822200	Weak transcription	NHEK	skin
37	chr14:70802400-70824800	Weak transcription	Brain Anterior Caudate	brain
38	chr14:70802600-70824800	Weak transcription	Brain Substantia Nigra	brain
39	chr14:70802800-70811400	Weak transcription	Fetal Brain Male	brain
40	chr14:70805000-70810600	Weak transcription	Fetal Stomach	stomach
41	chr14:70805000-70811200	Weak transcription	Brain Germinal Matrix	brain
42	chr14:70805000-70813000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr14:70805000-70819000	ZNF genes & repeats	GM12878-XiMat	blood
44	chr14:70805000-70825200	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr14:70805200-70810600	Weak transcription	Fetal Muscle Leg	muscle
46	chr14:70805400-70813000	ZNF genes & repeats	Primary T cells from cord blood	blood
47	chr14:70805600-70811600	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr14:70806400-70823600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr14:70806600-70813400	Weak transcription	Brain Hippocampus Middle	brain
50	chr14:70806600-70825200	Weak transcription	Fetal Kidney	kidney

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