Variant report

Variant	rs34768950
Chromosome Location	chr8:27513302-27513303
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10104133	1.00[AMR][1000 genomes]
rs17057614	1.00[AMR][1000 genomes]
rs2083532	1.00[AMR][1000 genomes]
rs73681631	1.00[AMR][1000 genomes]
rs73681632	1.00[AMR][1000 genomes]
rs73681633	1.00[AMR][1000 genomes]
rs73681634	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv610867	chr8:27464519-27614896	Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:27492000-27529000	Weak transcription	Fetal Kidney	kidney
2	chr8:27494600-27524400	Weak transcription	Hela-S3	cervix
3	chr8:27495800-27516000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr8:27497600-27527000	Weak transcription	Lung	lung
5	chr8:27503600-27516000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr8:27503800-27516200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr8:27503800-27516400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr8:27503800-27522400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr8:27504000-27523600	Weak transcription	Right Atrium	heart
10	chr8:27504200-27516400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr8:27504400-27514400	Weak transcription	Colon Smooth Muscle	Colon
12	chr8:27504800-27516200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr8:27504800-27527000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr8:27505600-27516400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr8:27505600-27516400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr8:27505600-27522400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr8:27507400-27513600	Weak transcription	HUVEC	blood vessel
18	chr8:27508000-27521800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr8:27509800-27516200	Weak transcription	Brain Substantia Nigra	brain
20	chr8:27510000-27516200	Weak transcription	Brain Angular Gyrus	brain
21	chr8:27510000-27522400	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr8:27510400-27514200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr8:27510400-27516200	Weak transcription	Fetal Brain Female	brain
24	chr8:27510600-27516400	Weak transcription	Fetal Muscle Leg	muscle
25	chr8:27510800-27513400	Weak transcription	NH-A	brain
26	chr8:27510800-27514200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr8:27510800-27514200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr8:27510800-27514200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr8:27510800-27516000	Weak transcription	Placenta	Placenta
30	chr8:27510800-27516400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr8:27510800-27519200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr8:27511000-27513400	Weak transcription	Osteobl	bone
33	chr8:27511000-27513600	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr8:27511000-27514200	Weak transcription	Brain Hippocampus Middle	brain
35	chr8:27511000-27514200	Weak transcription	Fetal Muscle Trunk	muscle
36	chr8:27511000-27514400	Weak transcription	Aorta	Aorta
37	chr8:27511000-27514400	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr8:27511000-27514400	Weak transcription	Esophagus	oesophagus
39	chr8:27511000-27515400	Weak transcription	Stomach Smooth Muscle	stomach
40	chr8:27511000-27515800	Weak transcription	HMEC	breast
41	chr8:27511000-27516000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr8:27511000-27516000	Weak transcription	NHEK	skin
43	chr8:27511000-27516200	Weak transcription	Brain Anterior Caudate	brain
44	chr8:27511000-27516400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr8:27511000-27516400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr8:27511000-27518600	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr8:27511000-27524000	Weak transcription	HSMM	muscle
48	chr8:27511000-27526600	Weak transcription	Right Ventricle	heart
49	chr8:27511000-27529000	Weak transcription	Gastric	stomach
50	chr8:27511200-27513400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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