Variant report

Variant	rs34769460
Chromosome Location	chr3:94025482-94025483
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10511147	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13064365	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13086346	0.89[ASN][1000 genomes]
rs34026151	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34034614	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34185703	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34253308	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34300056	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34359834	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34713554	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35149520	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35338673	0.84[ASN][1000 genomes]
rs35973758	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61298374	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67369555	0.86[AMR][1000 genomes]
rs71326816	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71326818	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71326819	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71326823	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9637395	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs995082	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869241	chr3:93527675-94504491	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv998173	chr3:93575084-94427403	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv536644	chr3:93575084-94427403	Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1008711	chr3:93575284-94427264	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv536646	chr3:93575284-94427264	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv491829	chr3:93575285-94427263	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
7	nsv1013107	chr3:93654100-94102212	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
8	nsv536648	chr3:93654100-94102212	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
9	nsv1004176	chr3:93654100-94502551	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
10	nsv877162	chr3:93779664-94278078	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
11	nsv877163	chr3:93795972-94047775	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv1000265	chr3:94012384-94259057	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv536650	chr3:94012384-94259057	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv877164	chr3:94018657-94146460	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv877165	chr3:94018657-94160736	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:94022200-94026000	Enhancers	Fetal Heart	heart
2	chr3:94022400-94026000	Enhancers	Adipose Nuclei	Adipose
3	chr3:94022600-94025600	Enhancers	Rectal Smooth Muscle	rectum
4	chr3:94022600-94026000	Enhancers	Duodenum Smooth Muscle	Duodenum
5	chr3:94022800-94025800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr3:94022800-94026000	Enhancers	Fetal Stomach	stomach
7	chr3:94023000-94025800	Enhancers	Colon Smooth Muscle	Colon
8	chr3:94023200-94025600	Weak transcription	Brain Angular Gyrus	brain
9	chr3:94023200-94027800	Weak transcription	Brain Hippocampus Middle	brain
10	chr3:94023400-94026000	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr3:94023800-94026000	Enhancers	Fetal Intestine Large	intestine
12	chr3:94024200-94026200	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr3:94024400-94026200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr3:94024600-94025800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr3:94024600-94026000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr3:94024600-94026000	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr3:94024600-94026000	Enhancers	Rectal Mucosa Donor 29	rectum
18	chr3:94025000-94025600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr3:94025000-94026000	Enhancers	Placenta	Placenta
20	chr3:94025000-94026400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
21	chr3:94025200-94025600	Flanking Active TSS	Sigmoid Colon	Sigmoid Colon
22	chr3:94025200-94025800	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr3:94025200-94026000	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr3:94025200-94026000	Enhancers	H1 Cell Line	embryonic stem cell
25	chr3:94025200-94026000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr3:94025200-94026000	Enhancers	H9 Cell Line	embryonic stem cell
27	chr3:94025200-94026000	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr3:94025200-94026000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr3:94025200-94026000	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr3:94025200-94026000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr3:94025200-94026000	Enhancers	Fetal Intestine Small	intestine
32	chr3:94025200-94026000	Enhancers	Lung	lung
33	chr3:94025400-94025600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr3:94025400-94025600	Active TSS	Fetal Lung	lung
35	chr3:94025400-94025800	Enhancers	Brain Anterior Caudate	brain
36	chr3:94025400-94025800	Enhancers	Stomach Smooth Muscle	stomach
37	chr3:94025400-94026000	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr3:94025400-94026000	Enhancers	HepG2	liver
39	chr3:94025400-94026200	Enhancers	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links