Variant report

Variant	rs34770513
Chromosome Location	chr9:3426069-3426070
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10814082	0.82[EUR][1000 genomes]
rs10814096	0.82[EUR][1000 genomes]
rs10814097	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10971976	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10972042	0.83[EUR][1000 genomes]
rs10972061	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10972079	0.82[EUR][1000 genomes]
rs12115798	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12339955	0.84[EUR][1000 genomes]
rs12554323	0.85[ASN][1000 genomes]
rs13300358	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13300995	0.82[ASN][1000 genomes]
rs13301035	0.90[ASN][1000 genomes]
rs13302841	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16924266	0.85[ASN][1000 genomes]
rs2380762	0.87[EUR][1000 genomes]
rs34086781	0.85[ASN][1000 genomes]
rs34123151	0.80[EUR][1000 genomes]
rs34708788	0.85[ASN][1000 genomes]
rs35412653	0.87[ASN][1000 genomes]
rs35625648	0.80[EUR][1000 genomes]
rs36091570	0.93[ASN][1000 genomes]
rs57004251	0.85[ASN][1000 genomes]
rs6476451	0.81[ASN][1000 genomes]
rs7028812	0.85[ASN][1000 genomes]
rs71506643	0.84[EUR][1000 genomes]
rs71506645	0.85[ASN][1000 genomes]
rs7850576	0.82[EUR][1000 genomes]
rs7853728	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7864440	0.84[EUR][1000 genomes]
rs7864459	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032921	chr9:3139007-3502815	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv539940	chr9:3139007-3502815	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv531566	chr9:3288211-3545454	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
4	nsv892089	chr9:3290569-3578094	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
5	nsv916259	chr9:3308176-4296711	Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
6	nsv1034280	chr9:3319718-3491987	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv539942	chr9:3319718-3491987	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1028815	chr9:3319718-3584455	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
9	nsv613147	chr9:3368111-3440355	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv892090	chr9:3391364-3496660	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:3387200-3433800	Weak transcription	Pancreas	Pancrea
2	chr9:3398800-3437200	Weak transcription	Primary B cells from cord blood	blood
3	chr9:3412000-3434600	Weak transcription	Ovary	ovary
4	chr9:3414200-3426200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr9:3419000-3437000	Weak transcription	Brain Substantia Nigra	brain
6	chr9:3420200-3426400	Weak transcription	Left Ventricle	heart
7	chr9:3420200-3427800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr9:3422600-3436800	Weak transcription	Psoas Muscle	Psoas
9	chr9:3425000-3426800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr9:3425000-3428000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:3425200-3426400	Weak transcription	Aorta	Aorta
12	chr9:3425600-3426400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr9:3425600-3453200	Weak transcription	Primary hematopoietic stem cells	blood

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