Variant report

Variant	rs34770624
Chromosome Location	chr16:71422334-71422335
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11075886	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11075887	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12373064	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12373108	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12595924	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12596074	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12597011	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12597949	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12599948	0.82[ASN][1000 genomes]
rs34297868	0.85[ASN][1000 genomes]
rs34623821	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34659305	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35060794	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35097873	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35886140	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4412976	0.83[ASN][1000 genomes]
rs4488452	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4630548	0.85[ASN][1000 genomes]
rs57243109	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6499513	0.82[ASN][1000 genomes]
rs7203012	0.81[ASN][1000 genomes]
rs72789961	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72789969	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7498368	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9929629	0.85[ASN][1000 genomes]
rs9935618	0.85[ASN][1000 genomes]
rs9940982	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949461	chr16:71196153-71579711	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv1062426	chr16:71307180-71423400	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv572949	chr16:71352071-71426563	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71419200-71422600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr16:71419200-71422800	Enhancers	H1 Cell Line	embryonic stem cell
3	chr16:71419400-71423400	Weak transcription	Adipose Nuclei	Adipose
4	chr16:71420600-71422600	Enhancers	Placenta Amnion	Placenta Amnion
5	chr16:71420600-71423600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr16:71421400-71423400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr16:71421800-71423400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr16:71421800-71423400	Weak transcription	Esophagus	oesophagus
9	chr16:71422000-71423200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr16:71422000-71423200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr16:71422000-71423600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr16:71422000-71423600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr16:71422000-71424000	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr16:71422200-71423400	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr16:71422200-71423400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr16:71422200-71426600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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