Variant report

Variant	rs34771613
Chromosome Location	chr8:100895661-100895662
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:100894717..100896294-chr8:100897963..100900047,2	K562	blood:
2	chr8:100884824..100892644-chr8:100893035..100898691,10	K562	blood:
3	chr8:100890039..100891811-chr8:100894568..100897400,2	K562	blood:
4	chr8:100894212..100902877-chr8:100903652..100908826,13	MCF-7	breast:
5	chr8:100892119..100896561-chr8:100901220..100906045,8	K562	blood:
6	chr8:100894717..100897458-chr8:100897759..100900943,4	K562	blood:
7	chr8:100888112..100894632-chr8:100894660..100899830,9	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000164919	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1130474	0.81[AFR][1000 genomes]
rs12548840	0.82[AFR][1000 genomes]
rs4510829	0.81[AFR][1000 genomes]
rs4626565	0.82[AFR][1000 genomes]
rs7812991	0.82[AFR][1000 genomes]
rs7844439	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033944	chr8:100737321-100916345	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv1830910	chr8:100791156-101114794	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs34771613	VPS13B	cis	Thyroid	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:100846400-100903800	Weak transcription	Stomach Mucosa	stomach
2	chr8:100868600-100898400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr8:100872000-100898200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr8:100872800-100903800	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr8:100880400-100900000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr8:100883000-100896000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr8:100883200-100901800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr8:100883600-100895800	Weak transcription	Fetal Heart	heart
9	chr8:100883600-100903200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr8:100883800-100901600	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr8:100883800-100903200	Strong transcription	Duodenum Mucosa	Duodenum
12	chr8:100884400-100898400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr8:100884400-100904800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr8:100885200-100903800	Weak transcription	Esophagus	oesophagus
15	chr8:100885600-100904800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr8:100885800-100895800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr8:100886000-100899800	Strong transcription	Rectal Mucosa Donor 31	rectum
18	chr8:100886800-100898200	Weak transcription	Small Intestine	intestine
19	chr8:100886800-100904000	Weak transcription	Right Ventricle	heart
20	chr8:100886800-100904800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr8:100888200-100898400	Weak transcription	Lung	lung
22	chr8:100888200-100900800	Weak transcription	Pancreas	Pancrea
23	chr8:100888400-100896000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr8:100888800-100897400	Weak transcription	HUVEC	blood vessel
25	chr8:100889000-100897600	Weak transcription	Hela-S3	cervix
26	chr8:100889200-100898200	Weak transcription	Brain Angular Gyrus	brain
27	chr8:100889200-100898600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr8:100889400-100898200	Weak transcription	Spleen	Spleen
29	chr8:100889400-100901000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr8:100889400-100904800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr8:100889600-100898200	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr8:100890600-100895800	Weak transcription	Fetal Kidney	kidney
33	chr8:100890800-100898400	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr8:100890800-100904000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr8:100891400-100904200	Weak transcription	Colonic Mucosa	Colon
36	chr8:100891600-100897600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr8:100892000-100896800	Weak transcription	NH-A	brain
38	chr8:100892400-100895800	Weak transcription	Psoas Muscle	Psoas
39	chr8:100892400-100897600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr8:100892400-100897600	Weak transcription	Left Ventricle	heart
41	chr8:100892400-100898200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr8:100892400-100903400	Weak transcription	Gastric	stomach
43	chr8:100892600-100895800	Weak transcription	Brain Cingulate Gyrus	brain
44	chr8:100892800-100898800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr8:100893000-100899200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr8:100893200-100897800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr8:100893400-100895800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr8:100893400-100896600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr8:100893400-100896600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
50	chr8:100893400-100897600	ZNF genes & repeats	Fetal Brain Female	brain

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