Variant report

Variant	rs34772309
Chromosome Location	chr10:28468459-28468460
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:28030939..28031493-chr10:28468370..28469079,2	MCF-7	breast:
2	chr10:28072359..28073289-chr10:28468062..28468930,2	MCF-7	breast:
3	chr10:28072564..28073290-chr10:28468225..28469172,4	MCF-7	breast:
4	chr10:28153808..28154667-chr10:28468156..28469155,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000251810	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10508734	0.85[EUR][1000 genomes]
rs10740784	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10826409	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006908	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17685100	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1781836	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2124954	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2490056	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2490058	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2801839	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2801840	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2985519	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2985526	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2985534	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2997201	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2997207	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2997209	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4309056	0.85[EUR][1000 genomes]
rs7087980	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7894070	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7916791	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7919947	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1042524	chr10:28290149-28506812	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv831816	chr10:28304698-28493635	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv525448	chr10:28337570-28563732	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv831817	chr10:28369836-28539930	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
7	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
8	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28449800-28497000	Weak transcription	Fetal Intestine Small	intestine
2	chr10:28461400-28469600	Weak transcription	Fetal Heart	heart
3	chr10:28467200-28468600	Active TSS	Primary T helper naive cells fromperipheralblood	blood
4	chr10:28467200-28469800	Enhancers	Fetal Lung	lung
5	chr10:28467200-28470400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr10:28467600-28469600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr10:28467600-28469600	Weak transcription	HSMM	muscle
8	chr10:28467600-28469600	Weak transcription	HSMMtube	muscle
9	chr10:28467600-28470600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:28467600-28472600	Weak transcription	Fetal Stomach	stomach
11	chr10:28467600-28485400	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr10:28467600-28491800	Weak transcription	Psoas Muscle	Psoas
13	chr10:28467600-28525600	Weak transcription	Aorta	Aorta
14	chr10:28467800-28468600	Enhancers	Liver	Liver
15	chr10:28467800-28468600	Enhancers	HUVEC	blood vessel
16	chr10:28467800-28468800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr10:28467800-28470600	Weak transcription	Osteobl	bone
18	chr10:28467800-28471000	Enhancers	Hela-S3	cervix
19	chr10:28467800-28495200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr10:28468000-28469400	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr10:28468200-28468600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr10:28468200-28468600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
23	chr10:28468200-28468600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr10:28468200-28468600	Enhancers	Duodenum Mucosa	Duodenum
25	chr10:28468200-28469000	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr10:28468200-28469200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr10:28468200-28469600	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr10:28468200-28469800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
29	chr10:28468200-28470400	Weak transcription	Colon Smooth Muscle	Colon
30	chr10:28468200-28470600	Weak transcription	Stomach Smooth Muscle	stomach
31	chr10:28468200-28471400	Weak transcription	Rectal Smooth Muscle	rectum
32	chr10:28468200-28484600	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr10:28468400-28468600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
34	chr10:28468400-28469000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr10:28468400-28469800	Enhancers	Primary T helper cells PMA-I stimulated	--
36	chr10:28468400-28469800	Enhancers	Primary T helper cells fromperipheralblood	blood
37	chr10:28468400-28470000	Enhancers	Primary T cells from cord blood	blood

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