The 2.0 version of rSNPBase

Variant report

Variant rs34773231
Chromosome Location chr1:95312603-95312604
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:95286600-95319800 Weak transcription Lung lung
2 chr1:95287000-95319800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
3 chr1:95287800-95320200 Weak transcription Rectal Smooth Muscle rectum
4 chr1:95289200-95314800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
5 chr1:95289200-95318600 Weak transcription HSMMtube muscle
6 chr1:95293600-95319800 Weak transcription Esophagus oesophagus
7 chr1:95293600-95320000 Weak transcription Duodenum Smooth Muscle Duodenum
8 chr1:95294000-95320400 Weak transcription Small Intestine intestine
9 chr1:95299200-95312800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
10 chr1:95301800-95328600 Strong transcription Fetal Intestine Large intestine
11 chr1:95303800-95316800 Weak transcription Left Ventricle heart
12 chr1:95304400-95314600 Weak transcription Pancreatic Islets Pancreatic Islet
13 chr1:95305400-95318200 Strong transcription Rectal Mucosa Donor 29 rectum
14 chr1:95305600-95315800 Weak transcription Brain Anterior Caudate brain
15 chr1:95306200-95318200 Strong transcription Sigmoid Colon Sigmoid Colon
16 chr1:95306200-95318800 Strong transcription Rectal Mucosa Donor 31 rectum
17 chr1:95306600-95320200 Weak transcription Aorta Aorta
18 chr1:95307400-95319800 Weak transcription iPS-15b Cell Line embryonic stem cell
19 chr1:95308400-95319800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
20 chr1:95308400-95320200 Weak transcription HepG2 liver
21 chr1:95308400-95320400 Weak transcription Stomach Mucosa stomach
22 chr1:95309200-95316200 Enhancers Fetal Thymus thymus
23 chr1:95309400-95312800 Weak transcription Right Ventricle heart
24 chr1:95309400-95314000 Weak transcription Spleen Spleen
25 chr1:95309400-95319400 Strong transcription Fetal Intestine Small intestine
26 chr1:95309800-95319400 Strong transcription Duodenum Mucosa Duodenum
27 chr1:95310000-95312800 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
28 chr1:95310200-95314800 Weak transcription Fetal Adrenal Gland Adrenal Gland
29 chr1:95310400-95317400 Strong transcription Breast Myoepithelial Primary Cells Breast
30 chr1:95311600-95313200 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
31 chr1:95311600-95315200 Strong transcription Pancreas Pancrea
32 chr1:95311800-95312800 Enhancers Fetal Lung lung
33 chr1:95311800-95313800 Enhancers Placenta Placenta
34 chr1:95312000-95313000 Strong transcription Colonic Mucosa Colon
35 chr1:95312000-95315200 Strong transcription Gastric stomach
36 chr1:95312200-95314800 Enhancers Placenta Amnion Placenta Amnion
37 chr1:95312400-95312800 Enhancers Fetal Muscle Trunk muscle
38 chr1:95312400-95313000 Enhancers Fetal Muscle Leg muscle
39 chr1:95312400-95315600 Strong transcription Fetal Stomach stomach
40 chr1:95312400-95316000 Weak transcription Fetal Heart heart
41 chr1:95312400-95318200 Strong transcription H1 Derived Mesenchymal Stem Cells ES cell derived
42 chr1:95312600-95314600 Weak transcription Thymus Thymus

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Last update: Aug 31, 2015