Variant report

Variant	rs34777382
Chromosome Location	chr16:12469071-12469072
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr16:12469054-12469162	HepG2	liver:	n/a	chr16:12469109-12469119 chr16:12469109-12469118 chr16:12469110-12469118 chr16:12469110-12469117 chr16:12469108-12469119

Variant related genes	Relation type
ENSG00000261394	TF binding region

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11075062	0.87[ASN][1000 genomes]
rs16959342	0.91[ASN][1000 genomes]
rs4781211	0.87[ASN][1000 genomes]
rs4781214	0.91[ASN][1000 genomes]
rs6498277	0.87[ASN][1000 genomes]
rs7184369	0.95[ASN][1000 genomes]
rs7202201	0.91[ASN][1000 genomes]
rs7203117	0.87[ASN][1000 genomes]
rs9635495	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043096	chr16:12013915-12840769	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv833141	chr16:12314613-12487992	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv457411	chr16:12363304-12520199	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv571462	chr16:12363304-12520199	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv571463	chr16:12367791-12783535	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv1045385	chr16:12376389-12517006	Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv542748	chr16:12376389-12517006	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:12435800-12484000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr16:12443600-12470800	Weak transcription	HepG2	liver
3	chr16:12444800-12491400	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr16:12447600-12470000	Weak transcription	Esophagus	oesophagus
5	chr16:12448600-12471200	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr16:12450800-12470000	Weak transcription	Fetal Thymus	thymus
7	chr16:12453000-12470600	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr16:12453200-12479000	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr16:12453400-12469400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr16:12454400-12469200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr16:12454600-12470800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr16:12455600-12479400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr16:12456200-12470600	Weak transcription	NHEK	skin
14	chr16:12456800-12478600	Weak transcription	Ovary	ovary
15	chr16:12457000-12492400	Weak transcription	Lung	lung
16	chr16:12457400-12469200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr16:12457400-12497400	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr16:12457600-12491600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr16:12457600-12497400	Weak transcription	Spleen	Spleen
20	chr16:12461000-12471200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr16:12461000-12471600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr16:12461000-12473400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr16:12461200-12470000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr16:12461200-12490200	Weak transcription	GM12878-XiMat	blood
25	chr16:12462000-12470600	Weak transcription	Primary T cells from cord blood	blood
26	chr16:12462800-12470000	Weak transcription	Left Ventricle	heart
27	chr16:12465200-12470000	Weak transcription	Right Atrium	heart
28	chr16:12465400-12470800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr16:12466800-12469400	Strong transcription	Primary B cells from cord blood	blood
30	chr16:12467800-12471800	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr16:12467800-12471800	Enhancers	Brain Substantia Nigra	brain
32	chr16:12467800-12472200	Enhancers	Brain Cingulate Gyrus	brain
33	chr16:12468200-12471600	Enhancers	Brain Hippocampus Middle	brain
34	chr16:12468200-12475800	Weak transcription	Primary B cells from peripheral blood	blood
35	chr16:12468600-12469400	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr16:12468600-12471600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr16:12468800-12472600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr16:12469000-12469400	Enhancers	NHDF-Ad	bronchial
39	chr16:12469000-12469600	Enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr16:12469000-12471600	Enhancers	Brain Angular Gyrus	brain
41	chr16:12469000-12471600	Enhancers	Brain Anterior Caudate	brain
42	chr16:12469000-12472200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr16:12469000-12474000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links