Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10804020	0.80[EUR][1000 genomes]
rs10931356	0.83[EUR][1000 genomes]
rs10931359	0.87[EUR][1000 genomes]
rs12465164	0.88[EUR][1000 genomes]
rs12465625	0.85[EUR][1000 genomes]
rs12473653	0.87[EUR][1000 genomes]
rs12474692	0.87[EUR][1000 genomes]
rs12611919	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12624002	0.85[EUR][1000 genomes]
rs13014693	0.80[EUR][1000 genomes]
rs35180255	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35365782	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35964306	0.80[EUR][1000 genomes]
rs4381753	0.86[EUR][1000 genomes]
rs4564741	0.85[EUR][1000 genomes]
rs4666759	0.84[EUR][1000 genomes]
rs4667221	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs4667222	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59106803	0.84[EUR][1000 genomes]
rs62183206	0.83[EUR][1000 genomes]
rs62183212	0.87[EUR][1000 genomes]
rs62183213	0.87[EUR][1000 genomes]
rs6724867	0.84[EUR][1000 genomes]
rs7566619	0.80[EUR][1000 genomes]
rs7586390	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534341	chr2:189200405-189368467	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv533786	chr2:189248503-189354495	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv584055	chr2:189266823-189493686	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189285600-189318800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:189285800-189318200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr2:189293600-189308800	Weak transcription	HUVEC	blood vessel
4	chr2:189304400-189315800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr2:189304400-189316600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:189305800-189318400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr2:189306400-189315000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr2:189306400-189317200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr2:189306600-189339000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr2:189306800-189310600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr2:189307400-189322400	Weak transcription	A549	lung
12	chr2:189308200-189315400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr2:189308200-189318400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr2:189308400-189317000	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr2:189308400-189317400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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