Variant report

Variant	rs34780411
Chromosome Location	chr8:10094075-10094076
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:10093019..10095444-chr8:10095651..10099192,3	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11777246	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11782517	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11782541	0.84[AMR][1000 genomes]
rs12544801	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12547261	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12549696	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12550483	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13248589	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13258235	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13266832	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13267960	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13274653	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34274326	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34856980	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35222693	0.85[AMR][1000 genomes]
rs35226696	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35451364	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4258008	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4276692	0.89[AMR][1000 genomes]
rs4295669	0.84[AMR][1000 genomes]
rs4504638	0.83[AMR][1000 genomes]
rs4563888	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62491598	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7845806	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831230	chr8:9953343-10139350	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1021921	chr8:9958259-10212555	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv831231	chr8:10001214-10189094	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1026335	chr8:10037279-10139782	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1030934	chr8:10065169-10561161	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv890346	chr8:10075373-10103435	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1016347	chr8:10091475-10223667	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10060200-10103000	Weak transcription	Gastric	stomach
2	chr8:10078800-10102800	Weak transcription	Brain Germinal Matrix	brain
3	chr8:10078800-10103000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr8:10079200-10102600	Weak transcription	Fetal Brain Female	brain
5	chr8:10093200-10102400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr8:10094000-10095200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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