Variant report

Variant	rs34786687
Chromosome Location	chr10:99496091-99496092
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF2	chr10:99496011-99497139	GM12878	blood:	n/a	n/a
2	E2F6	chr10:99495990-99497191	H1-hESC	embryonic stem cell:	n/a	chr10:99496778-99496785 chr10:99496855-99496864 chr10:99496778-99496785 chr10:99496857-99496866 chr10:99496789-99496798 chr10:99496778-99496785 chr10:99496774-99496786
3	POLR2A	chr10:99496061-99497907	GM18505	blood:	n/a	n/a
4	POLR2A	chr10:99496061-99498169	GM12891	blood:	n/a	n/a
5	E2F6	chr10:99496055-99497382	K562	blood:	n/a	chr10:99496778-99496785 chr10:99496855-99496864 chr10:99496778-99496785 chr10:99497296-99497306 chr10:99496857-99496866 chr10:99496789-99496798 chr10:99496778-99496785 chr10:99496774-99496786
6	MAX	chr10:99496033-99497619	A549	lung:	n/a	chr10:99496699-99496710 chr10:99496698-99496708 chr10:99496698-99496711 chr10:99496698-99496711 chr10:99496700-99496709 chr10:99496696-99496711 chr10:99496699-99496710
7	POLR2A	chr10:99496080-99497138	HCT-116	colon:	n/a	n/a
8	MAZ	chr10:99496062-99497141	GM12878	blood:	n/a	chr10:99496699-99496710 chr10:99496698-99496711 chr10:99496698-99496711 chr10:99496700-99496709 chr10:99496696-99496711 chr10:99496699-99496710
9	HCFC1	chr10:99495523-99497873	Hela-S3	cervix:	n/a	n/a
10	USF2	chr10:99496050-99496733	Hela-S3	cervix:	n/a	n/a
11	MAX	chr10:99495930-99497510	ECC-1	luminal epithelium:	n/a	chr10:99496699-99496710 chr10:99496698-99496708 chr10:99496698-99496711 chr10:99496698-99496711 chr10:99496700-99496709 chr10:99496696-99496711 chr10:99496699-99496710
12	NRF1	chr10:99496045-99497456	SK-N-SH	brain:	n/a	chr10:99496787-99496798 chr10:99496788-99496802 chr10:99496788-99496797 chr10:99496788-99496799
13	MTA3	chr10:99496090-99497647	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:99446145..99449629-chr10:99495749..99499452,3	K562	blood:
2	chr10:99460267..99463088-chr10:99494596..99496762,2	K562	blood:
3	chr10:99495273..99496977-chr10:99508285..99510585,2	MCF-7	breast:
4	chr10:99445750..99450066-chr10:99494053..99497713,5	MCF-7	breast:
5	chr10:99472472..99476089-chr10:99494153..99498366,9	MCF-7	breast:
6	chr10:99471547..99474270-chr10:99495747..99497533,2	K562	blood:
7	chr10:99472128..99477527-chr10:99495091..99498402,11	MCF-7	breast:
8	chr10:99446264..99449966-chr10:99495266..99498485,3	MCF-7	breast:
9	chr10:99256761..99259494-chr10:99495841..99497583,3	K562	blood:

Variant related genes	Relation type
ZFYVE27	TF binding region
ENSG00000165886	Chromatin interaction
ENSG00000155254	Chromatin interaction
ENSG00000119986	Chromatin interaction
ENSG00000155229	Chromatin interaction
ENSG00000155256	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs34840628	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv467441	chr10:99472710-99541104	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv552026	chr10:99472710-99541104	Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99478800-99496400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr10:99486800-99496200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr10:99486800-99496400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:99486800-99496400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr10:99486800-99496400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr10:99486800-99496400	Weak transcription	Pancreas	Pancrea
7	chr10:99486800-99496600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:99487000-99496400	Weak transcription	Brain Anterior Caudate	brain
9	chr10:99487000-99496400	Weak transcription	Colon Smooth Muscle	Colon
10	chr10:99487000-99496400	Weak transcription	A549	lung
11	chr10:99487200-99496400	Weak transcription	NHEK	skin
12	chr10:99487200-99496600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr10:99489200-99496200	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr10:99491600-99496400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr10:99491600-99496400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr10:99491600-99496400	Weak transcription	Brain Substantia Nigra	brain
17	chr10:99491600-99496400	Weak transcription	NHDF-Ad	bronchial
18	chr10:99491600-99496400	Weak transcription	NHLF	lung
19	chr10:99491800-99496200	Weak transcription	Brain Cingulate Gyrus	brain
20	chr10:99491800-99496400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr10:99492000-99496400	Weak transcription	HSMM	muscle
22	chr10:99492000-99496400	Weak transcription	Osteobl	bone
23	chr10:99492200-99496400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr10:99495400-99496400	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr10:99495400-99496800	Weak transcription	Aorta	Aorta
26	chr10:99495400-99497000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr10:99496000-99496200	Enhancers	Primary T helper naive cells from peripheral blood	blood
28	chr10:99496000-99496200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
29	chr10:99496000-99496200	Enhancers	Brain Angular Gyrus	brain
30	chr10:99496000-99496200	Enhancers	Dnd41	blood
31	chr10:99496000-99496200	Enhancers	Hela-S3	cervix
32	chr10:99496000-99496400	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr10:99496000-99496400	Enhancers	Primary B cells from peripheral blood	blood
34	chr10:99496000-99496400	Enhancers	Primary T cells fromperipheralblood	blood
35	chr10:99496000-99496400	Enhancers	Primary T helper cells fromperipheralblood	blood
36	chr10:99496000-99496400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
37	chr10:99496000-99496400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr10:99496000-99496600	Enhancers	HMEC	breast
39	chr10:99496000-99496600	Enhancers	K562	blood

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