Variant report

Variant	rs34788208
Chromosome Location	chr15:43441367-43441368
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:43423971..43426315-chr15:43439637..43441857,2	MCF-7	breast:
2	chr15:43436161..43437895-chr15:43441050..43442861,2	K562	blood:
3	chr15:43441064..43442651-chr15:43447205..43448712,2	K562	blood:
4	chr15:43398228..43401144-chr15:43439488..43441980,2	K562	blood:
5	chr15:43426566..43429300-chr15:43440939..43443897,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CCNDBP1-3	chr15:43441316-43441541	ncRnaDb_ncrna_FR005733_1

No data

Variant related genes	Relation type
ENSG00000137842	Chromatin interaction
ENSG00000159459	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12914014	1.00[AFR][1000 genomes]
rs16957288	1.00[LWK][hapmap]
rs17778356	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2412777	0.88[CEU][hapmap];1.00[LWK][hapmap]
rs34336488	1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34663640	1.00[CEU][hapmap];0.88[GIH][hapmap];0.93[TSI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71476425	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525461	chr15:43062548-43482127	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv1044522	chr15:43115348-43658417	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv515876	chr15:43116906-43445305	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv569240	chr15:43201109-43445305	Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv569241	chr15:43201109-43522922	Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	nsv569242	chr15:43210030-43445305	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
7	nsv904136	chr15:43257475-43482127	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
8	nsv904139	chr15:43268970-43482127	Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
9	nsv1044508	chr15:43270637-43658417	Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
10	nsv904144	chr15:43276345-43482127	Bivalent/Poised TSS Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
11	esv1802035	chr15:43370916-43487742	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43426600-43442200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr15:43426800-43455800	Weak transcription	Fetal Lung	lung
3	chr15:43426800-43465400	Weak transcription	Psoas Muscle	Psoas
4	chr15:43427000-43442200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr15:43427000-43442200	Weak transcription	NH-A	brain
6	chr15:43427600-43475000	Weak transcription	Stomach Mucosa	stomach
7	chr15:43427800-43448400	Weak transcription	Fetal Kidney	kidney
8	chr15:43428000-43445600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr15:43429400-43444400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr15:43430600-43442000	Weak transcription	HMEC	breast
11	chr15:43431000-43442000	Weak transcription	Fetal Thymus	thymus
12	chr15:43432200-43446400	Weak transcription	Small Intestine	intestine
13	chr15:43433200-43460600	Weak transcription	Right Ventricle	heart
14	chr15:43433400-43441800	Weak transcription	Aorta	Aorta
15	chr15:43433400-43441800	Weak transcription	Osteobl	bone
16	chr15:43433400-43442000	Weak transcription	NHLF	lung
17	chr15:43433400-43442400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr15:43433400-43442400	Weak transcription	NHEK	skin
19	chr15:43433400-43443600	Weak transcription	Fetal Muscle Trunk	muscle
20	chr15:43433400-43446000	Weak transcription	Brain Cingulate Gyrus	brain
21	chr15:43433400-43446000	Weak transcription	Ovary	ovary
22	chr15:43433400-43451800	Weak transcription	Esophagus	oesophagus
23	chr15:43433400-43452600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr15:43433400-43460400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr15:43433400-43460400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr15:43433400-43460400	Weak transcription	Spleen	Spleen
27	chr15:43433400-43460600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr15:43433400-43460600	Weak transcription	Gastric	stomach
29	chr15:43433400-43467600	Weak transcription	HSMM	muscle
30	chr15:43433600-43442400	Weak transcription	HepG2	liver
31	chr15:43433600-43442600	Weak transcription	Left Ventricle	heart
32	chr15:43433600-43444600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr15:43433600-43445400	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr15:43433600-43447000	Weak transcription	Fetal Stomach	stomach
35	chr15:43433600-43447800	Weak transcription	Brain Substantia Nigra	brain
36	chr15:43433600-43460400	Weak transcription	Pancreas	Pancrea
37	chr15:43433600-43460400	Weak transcription	Thymus	Thymus
38	chr15:43433800-43442400	Weak transcription	Fetal Muscle Leg	muscle
39	chr15:43433800-43442400	Weak transcription	Rectal Smooth Muscle	rectum
40	chr15:43433800-43451600	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr15:43434000-43441400	Weak transcription	Brain Germinal Matrix	brain
42	chr15:43434000-43442400	Weak transcription	A549	lung
43	chr15:43434000-43445600	Weak transcription	Brain Hippocampus Middle	brain
44	chr15:43434000-43460400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr15:43435000-43452200	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr15:43435400-43447000	Weak transcription	Fetal Intestine Small	intestine
47	chr15:43436800-43441800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr15:43437000-43443200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr15:43437000-43443600	Weak transcription	Primary T cells from cord blood	blood
50	chr15:43437000-43443600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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