Variant report

Variant	rs34792203
Chromosome Location	chr12:32658113-32658114
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10506092	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12579931	0.98[EUR][1000 genomes]
rs12830147	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16919947	0.98[ASN][1000 genomes]
rs16919964	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16919969	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16920000	0.81[ASN][1000 genomes]
rs1875311	0.98[ASN][1000 genomes]
rs2047642	0.98[ASN][1000 genomes]
rs34174269	0.87[ASN][1000 genomes]
rs34300980	1.00[EUR][1000 genomes]
rs35563266	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35590458	0.98[ASN][1000 genomes]
rs35885876	0.83[ASN][1000 genomes]
rs56838031	0.89[ASN][1000 genomes]
rs60069665	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67649350	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7135529	0.98[EUR][1000 genomes]
rs7297744	0.98[ASN][1000 genomes]
rs7305247	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7311935	0.98[ASN][1000 genomes]
rs7967302	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531960	chr12:32257285-32775277	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	esv2751096	chr12:32280340-32702784	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1054191	chr12:32534619-32733066	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv541455	chr12:32534619-32733066	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	esv3342938	chr12:32551041-32716745	Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv898970	chr12:32622097-32680236	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:32594600-32659000	Weak transcription	Esophagus	oesophagus
2	chr12:32649000-32660800	Weak transcription	Thymus	Thymus
3	chr12:32649600-32658200	Weak transcription	Primary T cells from cord blood	blood
4	chr12:32650800-32659200	Weak transcription	Aorta	Aorta
5	chr12:32654000-32658600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr12:32654400-32659400	Enhancers	HMEC	breast
7	chr12:32654800-32658600	Active TSS	Fetal Muscle Trunk	muscle
8	chr12:32655000-32658800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr12:32655000-32658800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
10	chr12:32655200-32661600	Weak transcription	Spleen	Spleen
11	chr12:32655200-32686000	Weak transcription	Lung	lung
12	chr12:32655400-32661000	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr12:32655800-32659000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr12:32656000-32658600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr12:32656000-32659200	Enhancers	Adipose Nuclei	Adipose
16	chr12:32656000-32661000	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr12:32656000-32666000	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr12:32656000-32668000	Weak transcription	Fetal Thymus	thymus
19	chr12:32656200-32658200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr12:32656200-32658200	Weak transcription	Fetal Kidney	kidney
21	chr12:32656200-32659800	Enhancers	H1 Cell Line	embryonic stem cell
22	chr12:32656200-32662600	Weak transcription	HepG2	liver
23	chr12:32656200-32668000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr12:32656400-32659400	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr12:32656400-32659400	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr12:32656400-32659800	Enhancers	Fetal Lung	lung
27	chr12:32656400-32660000	Enhancers	Fetal Intestine Small	intestine
28	chr12:32656400-32685800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr12:32656600-32658400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr12:32656800-32658200	Flanking Active TSS	HSMMtube	muscle
31	chr12:32656800-32659000	Enhancers	Stomach Mucosa	stomach
32	chr12:32656800-32659800	Enhancers	Fetal Intestine Large	intestine
33	chr12:32657000-32658200	Enhancers	H9 Cell Line	embryonic stem cell
34	chr12:32657000-32658200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr12:32657000-32658200	Enhancers	Pancreas	Pancrea
36	chr12:32657000-32658400	Enhancers	Right Atrium	heart
37	chr12:32657000-32658600	Flanking Active TSS	Brain Hippocampus Middle	brain
38	chr12:32657000-32659600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr12:32657000-32659600	Enhancers	Psoas Muscle	Psoas
40	chr12:32657000-32661000	Enhancers	iPS-15b Cell Line	embryonic stem cell
41	chr12:32657000-32661800	Enhancers	Primary monocytes fromperipheralblood	blood
42	chr12:32657200-32658200	Flanking Active TSS	Fetal Muscle Leg	muscle
43	chr12:32657200-32658200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
44	chr12:32657200-32658400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
45	chr12:32657200-32658400	Enhancers	Right Ventricle	heart
46	chr12:32657200-32658400	Flanking Active TSS	NHEK	skin
47	chr12:32657200-32658600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr12:32657200-32658600	Flanking Active TSS	Fetal Brain Female	brain
49	chr12:32657200-32658800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
50	chr12:32657200-32658800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links