Variant report

Variant	rs34793067
Chromosome Location	chr10:91292292-91292293
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12765829	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12778320	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12784228	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1556610	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17123666	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35296553	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35999721	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59089460	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59415468	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60158951	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66846065	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71503888	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91279400-91294800	Weak transcription	HSMM	muscle
2	chr10:91283600-91294600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr10:91289600-91292400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr10:91290600-91294000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr10:91291200-91292800	Enhancers	HMEC	breast
6	chr10:91291400-91292400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr10:91291400-91292400	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr10:91291400-91293600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
9	chr10:91291600-91293000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr10:91291600-91293200	Enhancers	NHEK	skin
11	chr10:91291800-91293800	Weak transcription	Pancreas	Pancrea
12	chr10:91292000-91292600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr10:91292000-91292800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr10:91292000-91293200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr10:91292000-91293600	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr10:91292000-91293600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
17	chr10:91292200-91292800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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