Variant report

Variant	rs34795458
Chromosome Location	chr8:124069823-124069824
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000178764	Chromatin interaction
ENSG00000272043	Chromatin interaction
ENSG00000272384	Chromatin interaction
ENSG00000156787	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10112234	1.00[AMR][1000 genomes]
rs28472858	1.00[AMR][1000 genomes]
rs28485492	1.00[AMR][1000 genomes]
rs28520053	1.00[AMR][1000 genomes]
rs28582857	1.00[AMR][1000 genomes]
rs28654188	1.00[AMR][1000 genomes]
rs28668142	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032827	chr8:123668081-124270400	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv529364	chr8:123763846-124373809	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	nsv429939	chr8:124027819-124180819	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv1028933	chr8:124065484-124181718	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124055800-124077600	Weak transcription	Thymus	Thymus
2	chr8:124066000-124070200	Weak transcription	HepG2	liver
3	chr8:124066000-124070400	Weak transcription	Fetal Lung	lung
4	chr8:124066600-124070000	Weak transcription	Esophagus	oesophagus
5	chr8:124066600-124070400	Weak transcription	Right Atrium	heart
6	chr8:124068800-124071000	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr8:124069000-124070200	Enhancers	A549	lung
8	chr8:124069400-124070400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr8:124069600-124070000	Enhancers	Hela-S3	cervix
10	chr8:124069600-124071000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr8:124069600-124071400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr8:124069800-124070000	Enhancers	NHEK	skin
13	chr8:124069800-124070400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr8:124069800-124070800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr8:124069800-124070800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr8:124069800-124070800	Enhancers	HMEC	breast
17	chr8:124069800-124070800	Enhancers	K562	blood
18	chr8:124069800-124071000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr8:124069800-124071200	Enhancers	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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