Variant report

Variant	rs34797968
Chromosome Location	chr20:52309772-52309773
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:50831023..50833009-chr20:52308051..52309841,2	MCF-7	breast:
2	chr17:57912841..57917165-chr20:52306237..52309842,4	MCF-7	breast:
3	chr20:52309398..52311832-chr20:52327074..52329815,2	K562	blood:
4	chr20:52194937..52195494-chr20:52309137..52309804,2	MCF-7	breast:
5	chr20:52309522..52310475-chr20:52556126..52556882,2	MCF-7	breast:
6	chr2:11670272..11672993-chr20:52308680..52310728,2	MCF-7	breast:
7	chr20:52308200..52309884-chr20:55825666..55827903,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000236352	Chromatin interaction
ENSG00000131398	Chromatin interaction
ENSG00000131408	Chromatin interaction
ENSG00000062716	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055342	chr20:52126973-52352323	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	214 gene(s)	inside rSNPs	diseases
2	esv3412883	chr20:52176349-52393416	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	250 gene(s)	inside rSNPs	diseases
3	nsv834007	chr20:52213864-52404557	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	174 gene(s)	inside rSNPs	diseases
4	nsv912935	chr20:52221906-52337118	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	101 gene(s)	inside rSNPs	diseases
5	nsv912936	chr20:52250876-52344962	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
6	nsv912937	chr20:52251863-52344962	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
7	esv34060	chr20:52251863-52702186	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	296 gene(s)	inside rSNPs	diseases
8	nsv518277	chr20:52276452-52315311	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
9	nsv912938	chr20:52276452-52328338	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
10	nsv437185	chr20:52300359-52330053	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
11	nsv517748	chr20:52304108-52315311	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
12	nsv437186	chr20:52309454-52315311	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:52305600-52311200	Weak transcription	Stomach Mucosa	stomach
2	chr20:52307800-52310000	Enhancers	Muscle Satellite Cultured Cells	--
3	chr20:52308000-52309800	Enhancers	Osteobl	bone
4	chr20:52308200-52310000	Enhancers	NH-A	brain
5	chr20:52308200-52310200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr20:52308200-52310400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr20:52308400-52309800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr20:52308400-52310000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr20:52308800-52310000	Enhancers	NHDF-Ad	bronchial
10	chr20:52309000-52309800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr20:52309000-52309800	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr20:52309000-52310000	Enhancers	NHLF	lung
13	chr20:52309000-52310400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr20:52309000-52310400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr20:52309200-52309800	Enhancers	Primary T cells fromperipheralblood	blood
16	chr20:52309200-52309800	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr20:52309200-52309800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr20:52309200-52309800	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr20:52309200-52309800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr20:52309200-52309800	Enhancers	Dnd41	blood
21	chr20:52309200-52310000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr20:52309200-52310000	Enhancers	HUVEC	blood vessel
23	chr20:52309200-52310200	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr20:52309200-52310200	Enhancers	Duodenum Mucosa	Duodenum
25	chr20:52309200-52310200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
26	chr20:52309200-52310400	Enhancers	Primary B cells from peripheral blood	blood
27	chr20:52309200-52310400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr20:52309200-52310400	Enhancers	Fetal Thymus	thymus
29	chr20:52309200-52310600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
30	chr20:52309400-52309800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
31	chr20:52309400-52309800	Enhancers	Primary T helper cells fromperipheralblood	blood
32	chr20:52309400-52309800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr20:52309400-52309800	Enhancers	Fetal Lung	lung
34	chr20:52309400-52310000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
35	chr20:52309400-52310200	Flanking Active TSS	Primary hematopoietic stem cells	blood
36	chr20:52309400-52310200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
37	chr20:52309400-52310200	Enhancers	Thymus	Thymus
38	chr20:52309400-52316000	Weak transcription	HepG2	liver
39	chr20:52309400-52324800	Weak transcription	Spleen	Spleen
40	chr20:52309600-52309800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr20:52309600-52309800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr20:52309600-52310000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
43	chr20:52309600-52310000	Weak transcription	Fetal Muscle Trunk	muscle
44	chr20:52309600-52310200	Flanking Active TSS	GM12878-XiMat	blood
45	chr20:52309600-52310400	Enhancers	Primary B cells from cord blood	blood
46	chr20:52309600-52310400	Flanking Active TSS	Primary T cells from cord blood	blood
47	chr20:52309600-52316000	Weak transcription	Adipose Nuclei	Adipose

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