Variant report

Variant	rs34804052
Chromosome Location	chr16:79850301-79850302
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11150221	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11150222	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12444621	0.88[EUR][1000 genomes]
rs62041353	0.87[EUR][1000 genomes]
rs62041359	0.87[EUR][1000 genomes]
rs62042360	0.88[EUR][1000 genomes]
rs62042410	1.00[ASN][1000 genomes]
rs62042411	1.00[ASN][1000 genomes]
rs62042414	1.00[ASN][1000 genomes]
rs62042415	1.00[ASN][1000 genomes]
rs62042422	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62042423	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62042424	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62042429	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62042430	1.00[ASN][1000 genomes]
rs62042431	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7498926	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv530714	chr16:79661581-79925435	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv833296	chr16:79692236-79889727	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv833297	chr16:79732501-79920419	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1059511	chr16:79847882-79925436	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv542984	chr16:79847882-79925436	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79849400-79850400	Enhancers	K562	blood
2	chr16:79849800-79850400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr16:79849800-79850400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr16:79850200-79850400	Enhancers	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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