Variant report

Variant	rs34804421
Chromosome Location	chr19:41030500-41030501
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10281	1.00[CHD][hapmap]
rs10411133	1.00[LWK][hapmap]
rs11880960	1.00[LWK][hapmap]
rs16974365	1.00[LWK][hapmap]
rs3745207	1.00[LWK][hapmap]
rs45533937	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830682	chr19:40880127-41270055	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
2	nsv911709	chr19:40928944-41060616	Bivalent/Poised TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
3	nsv911714	chr19:41006426-41165252	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	nsv911715	chr19:41014922-41141434	Bivalent Enhancer Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
5	nsv1057634	chr19:41019512-41174259	Enhancers Active TSS Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	nsv911716	chr19:41023511-41109456	Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
7	nsv911717	chr19:41023511-41141434	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41019200-41035200	Weak transcription	Right Atrium	heart
2	chr19:41019400-41034800	Weak transcription	Ovary	ovary
3	chr19:41020200-41034200	Weak transcription	Brain Hippocampus Middle	brain
4	chr19:41021400-41035200	Weak transcription	Brain Anterior Caudate	brain
5	chr19:41022000-41035000	Weak transcription	Brain Substantia Nigra	brain
6	chr19:41026200-41034800	Weak transcription	Right Ventricle	heart
7	chr19:41027400-41035000	Weak transcription	Fetal Brain Female	brain
8	chr19:41029200-41030600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr19:41029400-41030800	Flanking Active TSS	K562	blood
10	chr19:41029400-41034800	Weak transcription	Spleen	Spleen
11	chr19:41029400-41035200	Weak transcription	Brain Angular Gyrus	brain
12	chr19:41029600-41030600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr19:41029600-41031600	Weak transcription	Gastric	stomach
14	chr19:41029600-41034200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr19:41029600-41034400	Weak transcription	Colonic Mucosa	Colon
16	chr19:41029600-41034800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr19:41029600-41034800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr19:41029600-41034800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr19:41029600-41034800	Weak transcription	Pancreas	Pancrea
20	chr19:41029600-41034800	Weak transcription	Stomach Mucosa	stomach
21	chr19:41029600-41034800	Weak transcription	Dnd41	blood
22	chr19:41029600-41035000	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr19:41029600-41035200	Weak transcription	Brain Cingulate Gyrus	brain
24	chr19:41029600-41035400	Weak transcription	Liver	Liver
25	chr19:41029800-41031400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr19:41029800-41032000	Enhancers	A549	lung
27	chr19:41030000-41035000	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr19:41030200-41034800	Weak transcription	Hela-S3	cervix
29	chr19:41030400-41030600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived

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