Variant report

Variant	rs34810093
Chromosome Location	chr7:50108642-50108643
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12667606	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7786619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464444	chr7:49671882-50454736	Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv606897	chr7:49671883-50454736	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv498090	chr7:49708644-50427714	Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1020869	chr7:49712860-50457544	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv830997	chr7:49970866-50136498	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv830998	chr7:50103183-50156564	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50107400-50109200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:50107600-50109400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:50107600-50109800	Flanking Active TSS	Adipose Nuclei	Adipose
4	chr7:50107600-50109800	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr7:50107800-50108800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr7:50107800-50108800	Flanking Active TSS	Liver	Liver
7	chr7:50107800-50108800	Flanking Active TSS	Duodenum Mucosa	Duodenum
8	chr7:50107800-50108800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
9	chr7:50107800-50109400	Active TSS	Brain Inferior Temporal Lobe	brain
10	chr7:50107800-50109800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr7:50107800-50110000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
12	chr7:50108000-50108800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr7:50108000-50108800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
14	chr7:50108000-50108800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
15	chr7:50108000-50109200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr7:50108000-50109200	Flanking Active TSS	Primary B cells from cord blood	blood
17	chr7:50108000-50109400	Active TSS	Pancreas	Pancrea
18	chr7:50108000-50109400	Active TSS	Right Atrium	heart
19	chr7:50108000-50109400	Active TSS	Right Ventricle	heart
20	chr7:50108000-50109600	Flanking Active TSS	Primary hematopoietic stem cells	blood
21	chr7:50108000-50109600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
22	chr7:50108000-50109600	Active TSS	Psoas Muscle	Psoas
23	chr7:50108000-50109800	Flanking Active TSS	Primary T cells from cord blood	blood
24	chr7:50108000-50109800	Active TSS	Brain Anterior Caudate	brain
25	chr7:50108000-50109800	Active TSS	Brain Cingulate Gyrus	brain
26	chr7:50108000-50109800	Active TSS	Ovary	ovary
27	chr7:50108000-50109800	Flanking Active TSS	NHEK	skin
28	chr7:50108200-50108800	Flanking Active TSS	Brain Germinal Matrix	brain
29	chr7:50108200-50109000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
30	chr7:50108200-50109200	Active TSS	GM12878-XiMat	blood
31	chr7:50108200-50109400	Active TSS	Breast Myoepithelial Primary Cells	Breast
32	chr7:50108200-50109600	Active TSS	Aorta	Aorta
33	chr7:50108200-50109600	Active TSS	NHDF-Ad	bronchial
34	chr7:50108200-50109800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr7:50108200-50113200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr7:50108400-50108800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr7:50108400-50108800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
38	chr7:50108400-50108800	Flanking Active TSS	Primary B cells from peripheral blood	blood
39	chr7:50108400-50108800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
40	chr7:50108400-50108800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
41	chr7:50108400-50109000	Active TSS	HUES64 Cell Line	embryonic stem cell
42	chr7:50108400-50109000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr7:50108400-50109200	Active TSS	HUES6 Cell Line	embryonic stem cell
44	chr7:50108400-50109200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr7:50108400-50109200	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
46	chr7:50108400-50109200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr7:50108400-50109200	Active TSS	Fetal Stomach	stomach
48	chr7:50108400-50109200	Flanking Active TSS	Fetal Thymus	thymus
49	chr7:50108400-50109200	Active TSS	Sigmoid Colon	Sigmoid Colon
50	chr7:50108400-50109400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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