Variant report

Variant	rs34820891
Chromosome Location	chr3:46698059-46698060
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:46697148..46699057-chr3:46702525..46705499,2	K562	blood:
2	chr3:46693588..46695297-chr3:46696531..46698308,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11130099	0.85[ASN][1000 genomes]
rs11130102	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11710586	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11719679	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11922418	0.87[ASN][1000 genomes]
rs12491236	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12491294	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13083665	0.87[ASN][1000 genomes]
rs1402148	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1520488	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1520489	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1581325	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1607737	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34000414	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34063921	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4234464	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4683256	0.92[ASN][1000 genomes]
rs4683260	0.84[ASN][1000 genomes]
rs4683271	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6442011	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6442012	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6808214	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7373994	0.94[ASN][1000 genomes]
rs7644072	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs877680	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs877681	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs950190	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9845998	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013306	chr3:46469014-46698538	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1007449	chr3:46652343-46986578	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv536554	chr3:46652343-46986578	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
4	nsv876739	chr3:46656980-46744966	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv876740	chr3:46656980-46748453	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv876741	chr3:46663372-46763839	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv516623	chr3:46680063-46852679	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	esv2757869	chr3:46680452-46972489	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
9	esv2759147	chr3:46680452-46972489	Genic enhancers Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46688400-46700800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:46693400-46701800	Weak transcription	Right Atrium	heart
3	chr3:46697800-46698800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:46697800-46699000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr3:46698000-46699000	Enhancers	H1 Cell Line	embryonic stem cell
6	chr3:46698000-46699000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr3:46698000-46699000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr3:46698000-46699000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr3:46698000-46699200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr3:46698000-46699400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:46698000-46699400	Enhancers	NHDF-Ad	bronchial
12	chr3:46698000-46707600	Weak transcription	Gastric	stomach

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