Variant report

Variant	rs34821834
Chromosome Location	chr9:16536397-16536398
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12115663	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17811225	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs67498978	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67602727	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1028923	chr9:16519711-16547863	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv982616	chr9:16533641-16536774	Weak transcription Enhancers Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16522800-16540800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr9:16525000-16551400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr9:16528000-16553200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr9:16528800-16551200	Weak transcription	Fetal Intestine Large	intestine
5	chr9:16531400-16540800	Weak transcription	Psoas Muscle	Psoas
6	chr9:16531400-16541200	Weak transcription	Fetal Lung	lung
7	chr9:16531400-16551200	Weak transcription	Fetal Stomach	stomach
8	chr9:16531600-16540800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr9:16532200-16537400	Enhancers	Colon Smooth Muscle	Colon
10	chr9:16533000-16541200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr9:16533200-16540600	Weak transcription	NH-A	brain
12	chr9:16533200-16540800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr9:16533200-16540800	Weak transcription	A549	lung
14	chr9:16533200-16540800	Weak transcription	HSMM	muscle
15	chr9:16533600-16540800	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr9:16533800-16540800	Weak transcription	NHLF	lung
17	chr9:16534000-16542600	Weak transcription	Rectal Smooth Muscle	rectum
18	chr9:16535800-16537600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr9:16535800-16538800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr9:16536000-16538200	Weak transcription	Osteobl	bone
21	chr9:16536000-16540800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr9:16536000-16540800	Weak transcription	Ovary	ovary
23	chr9:16536000-16540800	Weak transcription	NHDF-Ad	bronchial
24	chr9:16536000-16541000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr9:16536000-16541000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr9:16536000-16552200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr9:16536200-16536800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr9:16536200-16540600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr9:16536200-16551600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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