Variant report

Variant	rs34823797
Chromosome Location	chr7:137419452-137419453
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1025086	0.89[EUR][1000 genomes]
rs11521066	0.90[EUR][1000 genomes]
rs11974293	0.85[EUR][1000 genomes]
rs11974351	0.83[EUR][1000 genomes]
rs11976083	0.88[EUR][1000 genomes]
rs11976084	0.88[EUR][1000 genomes]
rs13235392	0.90[EUR][1000 genomes]
rs1364396	0.87[EUR][1000 genomes]
rs1547995	0.90[EUR][1000 genomes]
rs35383906	0.91[EUR][1000 genomes]
rs3778803	0.91[EUR][1000 genomes]
rs3800645	0.91[EUR][1000 genomes]
rs3800649	0.84[EUR][1000 genomes]
rs3800653	0.89[EUR][1000 genomes]
rs4329223	0.83[EUR][1000 genomes]
rs6947142	0.90[EUR][1000 genomes]
rs7795269	0.91[EUR][1000 genomes]
rs7795441	0.91[EUR][1000 genomes]
rs7802342	0.90[EUR][1000 genomes]
rs7811169	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137411000-137424800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr7:137413400-137432200	Weak transcription	Aorta	Aorta
3	chr7:137414200-137419600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr7:137416600-137424400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr7:137416600-137438000	Weak transcription	NH-A	brain
6	chr7:137418600-137419600	Enhancers	Placenta	Placenta
7	chr7:137418800-137419600	Enhancers	HSMMtube	muscle
8	chr7:137418800-137419800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr7:137419200-137419600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr7:137419200-137431000	Weak transcription	Osteobl	bone
11	chr7:137419400-137424800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr7:137419400-137438200	Weak transcription	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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