Variant report

Variant	rs34825990
Chromosome Location	chr6:15278053-15278054
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15277792..15279699-chr6:15286408..15288294,2	K562	blood:
2	chr6:15242226..15244729-chr6:15276839..15280020,3	K562	blood:
3	chr6:15272773..15275476-chr6:15276745..15279472,5	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11754102	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62397315	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9370809	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9396579	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027010	chr6:15201803-15425629	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1030558	chr6:15234675-15449137	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv538141	chr6:15234675-15509163	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv538142	chr6:15243960-15404893	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv601006	chr6:15275305-15300590	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15251200-15279400	Weak transcription	A549	lung
2	chr6:15261000-15283800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:15265400-15279000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr6:15266200-15279200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:15267200-15279600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr6:15268000-15279800	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr6:15269200-15290000	Weak transcription	NHLF	lung
8	chr6:15269800-15280000	Weak transcription	NHDF-Ad	bronchial
9	chr6:15270000-15280800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:15270000-15281000	Weak transcription	Spleen	Spleen
11	chr6:15270000-15285400	Weak transcription	Thymus	Thymus
12	chr6:15270200-15279600	Weak transcription	Rectal Smooth Muscle	rectum
13	chr6:15270200-15279800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr6:15270200-15281600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr6:15270200-15288800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr6:15271000-15278800	Weak transcription	Duodenum Mucosa	Duodenum
17	chr6:15271000-15278800	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr6:15271000-15279000	Weak transcription	Fetal Intestine Large	intestine
19	chr6:15271000-15279200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:15274400-15278200	Enhancers	Primary hematopoietic stem cells	blood
21	chr6:15274600-15278400	Enhancers	Brain Anterior Caudate	brain
22	chr6:15274800-15278400	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr6:15274800-15278400	Enhancers	Brain Substantia Nigra	brain
24	chr6:15274800-15278800	Enhancers	Adipose Nuclei	Adipose
25	chr6:15274800-15279800	Enhancers	Psoas Muscle	Psoas
26	chr6:15274800-15280000	Enhancers	Liver	Liver
27	chr6:15275000-15278200	Enhancers	Colon Smooth Muscle	Colon
28	chr6:15275000-15279400	Enhancers	HepG2	liver
29	chr6:15275000-15280200	Weak transcription	Fetal Stomach	stomach
30	chr6:15275000-15282600	Enhancers	Primary B cells from peripheral blood	blood
31	chr6:15275400-15278800	Weak transcription	Fetal Muscle Trunk	muscle
32	chr6:15275400-15279600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr6:15275400-15279600	Weak transcription	Stomach Mucosa	stomach
34	chr6:15275400-15281000	Weak transcription	Right Atrium	heart
35	chr6:15275400-15286000	Weak transcription	HSMM	muscle
36	chr6:15275400-15287800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr6:15275600-15278200	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr6:15275600-15278200	Enhancers	HUES64 Cell Line	embryonic stem cell
39	chr6:15275600-15278400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr6:15275600-15279200	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr6:15275600-15279800	Weak transcription	NHEK	skin
42	chr6:15275600-15281000	Weak transcription	Brain Angular Gyrus	brain
43	chr6:15275600-15285000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr6:15275800-15278400	Enhancers	Primary T helper cells PMA-I stimulated	--
45	chr6:15275800-15280800	Weak transcription	Fetal Thymus	thymus
46	chr6:15276200-15278800	Weak transcription	Fetal Intestine Small	intestine
47	chr6:15276200-15279800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr6:15276200-15281600	Weak transcription	Fetal Heart	heart
49	chr6:15276200-15282600	Enhancers	Primary T helper cells fromperipheralblood	blood
50	chr6:15276400-15279600	Weak transcription	Duodenum Smooth Muscle	Duodenum

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