Variant report

Variant	rs34828402
Chromosome Location	chr7:38773237-38773238
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:38767860..38770728-chr7:38772914..38774538,2	MCF-7	breast:
2	chr7:38772482..38774606-chr7:38774612..38777168,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13228699	1.00[ASN][1000 genomes]
rs34255211	1.00[ASN][1000 genomes]
rs35776438	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73115615	1.00[ASN][1000 genomes]
rs73127623	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887965	chr7:38706384-38793243	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38749000-38803600	Weak transcription	Fetal Brain Male	brain
2	chr7:38755000-38791200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:38757000-38784200	Weak transcription	HMEC	breast
4	chr7:38757200-38835400	Weak transcription	Psoas Muscle	Psoas
5	chr7:38758600-38780600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr7:38758800-38780000	Weak transcription	Brain Substantia Nigra	brain
7	chr7:38759200-38810200	Weak transcription	A549	lung
8	chr7:38759400-38810600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr7:38759600-38779600	Weak transcription	Thymus	Thymus
10	chr7:38759600-38784200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr7:38759800-38780600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr7:38760000-38799800	Weak transcription	HUVEC	blood vessel
13	chr7:38760600-38800200	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr7:38761000-38820400	Weak transcription	Stomach Mucosa	stomach
15	chr7:38761200-38785400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr7:38762600-38793200	Weak transcription	Hela-S3	cervix
17	chr7:38763200-38828000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr7:38763400-38780400	Weak transcription	Fetal Kidney	kidney
19	chr7:38763400-38792600	Weak transcription	Small Intestine	intestine
20	chr7:38763400-38828800	Weak transcription	HepG2	liver
21	chr7:38763800-38791600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr7:38764400-38787600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr7:38764800-38775000	Weak transcription	Fetal Heart	heart
24	chr7:38764800-38775200	Weak transcription	HSMMtube	muscle
25	chr7:38764800-38784200	Weak transcription	NHEK	skin
26	chr7:38765400-38784200	Weak transcription	NHLF	lung
27	chr7:38765400-38789600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr7:38765400-38802800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr7:38765600-38779600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr7:38765600-38779600	Weak transcription	Spleen	Spleen
31	chr7:38765600-38784200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr7:38765600-38784400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr7:38766000-38784200	Weak transcription	NH-A	brain
34	chr7:38766000-38791800	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr7:38766200-38780000	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr7:38766200-38783400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr7:38766600-38780600	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr7:38766600-38782600	Weak transcription	Colon Smooth Muscle	Colon
39	chr7:38766600-38791600	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr7:38766800-38784200	Weak transcription	NHDF-Ad	bronchial
41	chr7:38767000-38779200	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr7:38767200-38779800	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr7:38767200-38779800	Weak transcription	Rectal Smooth Muscle	rectum
44	chr7:38767200-38780200	Weak transcription	Ovary	ovary
45	chr7:38767200-38780400	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr7:38767200-38792600	Weak transcription	Colonic Mucosa	Colon
47	chr7:38767200-38802800	Weak transcription	Right Ventricle	heart
48	chr7:38767200-38805800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr7:38767400-38775000	Weak transcription	Duodenum Mucosa	Duodenum
50	chr7:38767400-38775200	Weak transcription	Pancreas	Pancrea

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