Variant report

Variant	rs34830987
Chromosome Location	chr11:45705838-45705839
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs67436581	0.84[EUR][1000 genomes]
rs72898661	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467870	chr11:45684557-45757401	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv554199	chr11:45684557-45757401	Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45700600-45706000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:45700800-45717800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:45703800-45707400	Enhancers	Dnd41	blood
4	chr11:45704400-45706600	Enhancers	Fetal Thymus	thymus
5	chr11:45704800-45706000	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr11:45705400-45706000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:45705600-45706800	Enhancers	Thymus	Thymus
8	chr11:45705800-45706200	Enhancers	H1 Cell Line	embryonic stem cell
9	chr11:45705800-45706200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr11:45705800-45706600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr11:45705800-45706800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:45705800-45707400	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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