Variant report

Variant	rs34831741
Chromosome Location	chr2:59463802-59463803
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12475111	1.00[EUR][1000 genomes]
rs12618448	0.85[AMR][1000 genomes]
rs12991901	1.00[EUR][1000 genomes]
rs13000669	1.00[EUR][1000 genomes]
rs17049967	0.86[EUR][1000 genomes]
rs17050022	0.91[AMR][1000 genomes]
rs17050060	0.83[AMR][1000 genomes]
rs1861149	0.83[AMR][1000 genomes]
rs1861150	0.83[AMR][1000 genomes]
rs2192561	0.83[AMR][1000 genomes]
rs4446061	0.83[AMR][1000 genomes]
rs4672282	0.83[AMR][1000 genomes]
rs71420311	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834170	chr2:59436676-59604794	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:59461400-59466000	Weak transcription	Fetal Brain Male	brain
2	chr2:59461800-59466200	Weak transcription	Fetal Brain Female	brain
3	chr2:59463200-59464600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr2:59463200-59464600	Enhancers	Hela-S3	cervix
5	chr2:59463600-59464000	Enhancers	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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