Variant report

Variant	rs34834301
Chromosome Location	chr15:58333011-58333012
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16939647	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16939660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16939661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16939714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16939716	1.00[EUR][1000 genomes]
rs16939739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16977872	1.00[EUR][1000 genomes]
rs16977873	1.00[EUR][1000 genomes]
rs34682734	1.00[EUR][1000 genomes]
rs35153668	1.00[EUR][1000 genomes]
rs35411491	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35636428	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4646634	0.83[EUR][1000 genomes]
rs74017101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74018811	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74018812	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74018813	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv833023	chr15:58161839-58340174	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv904261	chr15:58258424-58347260	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58328800-58333400	Enhancers	Fetal Lung	lung
2	chr15:58328800-58333800	Enhancers	Fetal Intestine Small	intestine
3	chr15:58330400-58333200	Enhancers	HMEC	breast
4	chr15:58331000-58333200	Weak transcription	Small Intestine	intestine
5	chr15:58331000-58335000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr15:58331400-58335000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr15:58331600-58336000	Genic enhancers	K562	blood
8	chr15:58331800-58335800	Weak transcription	Fetal Stomach	stomach
9	chr15:58332200-58333200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr15:58332200-58338200	Weak transcription	Fetal Intestine Large	intestine
11	chr15:58332800-58333800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr15:58332800-58334000	Weak transcription	HUVEC	blood vessel
13	chr15:58332800-58334200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr15:58332800-58335000	Weak transcription	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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