Variant report

Variant	rs34835607
Chromosome Location	chr19:36132149-36132150
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUN	chr19:36132002-36132740	K562	blood:	n/a	chr19:36132586-36132595

No.	Distal block	Cell Line	Cell type
1	chr19:36118444..36125285-chr19:36125367..36133017,11	MCF-7	breast:
2	chr19:36118103..36121861-chr19:36131558..36136331,8	MCF-7	breast:
3	chr19:36130612..36132622-chr19:36230122..36231956,2	MCF-7	breast:
4	chr19:36108327..36112195-chr19:36132084..36135351,3	MCF-7	breast:
5	chr19:36048687..36051481-chr19:36131939..36134818,2	K562	blood:

Variant related genes	Relation type
ETV2	TF binding region
ENSG00000105675	Chromatin interaction
ENSG00000249115	Chromatin interaction
ENSG00000126246	Chromatin interaction
ENSG00000126254	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs170758	1.00[CHD][hapmap];1.00[LWK][hapmap]
rs2301596	1.00[CHD][hapmap];1.00[LWK][hapmap]
rs35617825	1.00[CHD][hapmap]
rs4805135	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv1060100	chr19:35658505-36170042	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv543993	chr19:35658505-36170042	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
4	nsv911629	chr19:36122886-36136449	Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36120800-36132400	Weak transcription	Fetal Heart	heart
2	chr19:36120800-36134000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr19:36122200-36132800	Weak transcription	Stomach Mucosa	stomach
4	chr19:36123000-36134000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr19:36123400-36133600	Weak transcription	Fetal Brain Male	brain
6	chr19:36123600-36132200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr19:36124000-36132200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr19:36124200-36134000	Weak transcription	Psoas Muscle	Psoas
9	chr19:36128000-36134000	Weak transcription	HSMM	muscle
10	chr19:36128000-36134400	Weak transcription	Fetal Kidney	kidney
11	chr19:36128400-36132200	Weak transcription	Primary B cells from cord blood	blood
12	chr19:36128400-36132200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr19:36128400-36132400	Weak transcription	NH-A	brain
14	chr19:36128800-36132200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr19:36128800-36132200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr19:36129000-36132200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr19:36129000-36132200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr19:36129000-36132200	Weak transcription	Small Intestine	intestine
19	chr19:36129000-36132200	Weak transcription	HMEC	breast
20	chr19:36129000-36132200	Weak transcription	NHDF-Ad	bronchial
21	chr19:36129000-36132400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr19:36129000-36132400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr19:36129000-36132400	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr19:36129000-36132400	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr19:36129000-36132800	Weak transcription	Colonic Mucosa	Colon
26	chr19:36129000-36133200	Weak transcription	Duodenum Mucosa	Duodenum
27	chr19:36129000-36133400	Weak transcription	Esophagus	oesophagus
28	chr19:36129000-36133600	Weak transcription	Colon Smooth Muscle	Colon
29	chr19:36129000-36133800	Weak transcription	Rectal Smooth Muscle	rectum
30	chr19:36129000-36133800	Weak transcription	Hela-S3	cervix
31	chr19:36129000-36134000	Weak transcription	Aorta	Aorta
32	chr19:36129000-36134000	Weak transcription	Brain Cingulate Gyrus	brain
33	chr19:36129000-36134000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr19:36129000-36134000	Weak transcription	Brain Substantia Nigra	brain
35	chr19:36129000-36134000	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr19:36129000-36134200	Weak transcription	Brain Angular Gyrus	brain
37	chr19:36129000-36134200	Weak transcription	HSMMtube	muscle
38	chr19:36129200-36132200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr19:36129200-36132200	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr19:36129200-36132200	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr19:36129200-36132200	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr19:36129200-36132200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr19:36129200-36132200	Weak transcription	HUVEC	blood vessel
44	chr19:36129200-36132400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr19:36129200-36132400	Weak transcription	Fetal Lung	lung
46	chr19:36129200-36132800	Weak transcription	Pancreas	Pancrea
47	chr19:36129200-36132800	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr19:36129200-36133400	Weak transcription	NHEK	skin
49	chr19:36129200-36133600	Weak transcription	Brain Germinal Matrix	brain
50	chr19:36129200-36134000	Weak transcription	Gastric	stomach

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