Variant report

Variant	rs34836950
Chromosome Location	chr7:127223082-127223083
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:127203098..127205037-chr7:127222496..127224357,2	MCF-7	breast:
2	chr7:127030414..127032802-chr7:127220953..127224227,3	K562	blood:
3	chr7:127210811..127213532-chr7:127222493..127224995,2	K562	blood:
4	chr7:127193697..127196034-chr7:127222065..127224629,3	K562	blood:
5	chr7:127222868..127230871-chr7:127290370..127294912,16	K562	blood:

Variant related genes	Relation type
ENSG00000197157	Chromatin interaction
ENSG00000048405	Chromatin interaction
ENSG00000240790	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17730300	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831122	chr7:127143207-127357885	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127218000-127223200	Strong transcription	Primary B cells from cord blood	blood
2	chr7:127218000-127223400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr7:127218000-127223400	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr7:127218200-127223200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr7:127218200-127223600	Strong transcription	Primary hematopoietic stem cells	blood
6	chr7:127218200-127223600	Strong transcription	Fetal Intestine Large	intestine
7	chr7:127218200-127223800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:127218800-127223400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:127219000-127223400	Strong transcription	K562	blood
10	chr7:127219200-127223600	Strong transcription	Rectal Mucosa Donor 31	rectum
11	chr7:127219800-127223200	Genic enhancers	Liver	Liver
12	chr7:127220200-127223600	Strong transcription	HUES48 Cell Line	embryonic stem cell
13	chr7:127220200-127224200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
14	chr7:127220400-127223600	Genic enhancers	Primary T helper cells PMA-I stimulated	--
15	chr7:127220400-127223600	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr7:127220600-127223200	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr7:127220800-127223200	Strong transcription	NHEK	skin
18	chr7:127220800-127223200	Strong transcription	Osteobl	bone
19	chr7:127220800-127223400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr7:127220800-127223600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr7:127220800-127223600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr7:127220800-127223800	Genic enhancers	Brain Cingulate Gyrus	brain
23	chr7:127220800-127224000	Genic enhancers	Fetal Stomach	stomach
24	chr7:127221000-127223200	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr7:127221000-127223200	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr7:127221000-127223200	Strong transcription	Sigmoid Colon	Sigmoid Colon
27	chr7:127221000-127223400	Genic enhancers	Primary monocytes fromperipheralblood	blood
28	chr7:127221000-127223400	Strong transcription	Aorta	Aorta
29	chr7:127221000-127223400	Genic enhancers	Duodenum Smooth Muscle	Duodenum
30	chr7:127221000-127223400	Genic enhancers	Fetal Brain Female	brain
31	chr7:127221000-127223600	Genic enhancers	Brain Angular Gyrus	brain
32	chr7:127221000-127223600	Genic enhancers	Brain Inferior Temporal Lobe	brain
33	chr7:127221000-127223800	Genic enhancers	Dnd41	blood
34	chr7:127221000-127224000	Genic enhancers	Placenta	Placenta
35	chr7:127221000-127224200	Genic enhancers	Primary T cells fromperipheralblood	blood
36	chr7:127221000-127224200	Enhancers	Fetal Heart	heart
37	chr7:127221200-127223400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
38	chr7:127221200-127223400	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr7:127221200-127223400	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr7:127221200-127223400	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
41	chr7:127221200-127223400	Strong transcription	A549	lung
42	chr7:127221200-127223400	Strong transcription	HUVEC	blood vessel
43	chr7:127221200-127223600	Strong transcription	H1 Cell Line	embryonic stem cell
44	chr7:127221200-127223600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr7:127221200-127223600	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
46	chr7:127221200-127223600	Strong transcription	Fetal Lung	lung
47	chr7:127221200-127223600	Strong transcription	HMEC	breast
48	chr7:127221200-127223800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr7:127221200-127223800	Strong transcription	HUES64 Cell Line	embryonic stem cell
50	chr7:127221200-127224200	Genic enhancers	Gastric	stomach

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