Variant report

Variant	rs34840261
Chromosome Location	chr4:90652298-90652299
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830400	chr4:90085456-90922432	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1012406	chr4:90167781-91166787	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv949454	chr4:90272120-91156917	Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv966296	chr4:90652076-90654451	Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:90640800-90659000	Weak transcription	HMEC	breast
2	chr4:90640800-90659200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr4:90642800-90668800	Weak transcription	Brain Substantia Nigra	brain
4	chr4:90646000-90659200	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr4:90646400-90661000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr4:90646800-90674000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr4:90647200-90652600	Strong transcription	HUVEC	blood vessel
8	chr4:90648000-90668000	Weak transcription	Ovary	ovary
9	chr4:90648200-90673400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr4:90648600-90660000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr4:90648800-90667200	Weak transcription	Fetal Lung	lung
12	chr4:90649200-90658800	Weak transcription	NHEK	skin
13	chr4:90649400-90674000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr4:90649400-90696400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr4:90650400-90659400	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr4:90650600-90660000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr4:90650600-90663000	Weak transcription	Dnd41	blood
18	chr4:90650800-90656000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr4:90650800-90664200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr4:90652200-90653600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links