Variant report

Variant	rs34853300
Chromosome Location	chr5:29248646-29248647
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10035590	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10037627	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10040502	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10041165	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13158781	1.00[ASN][1000 genomes]
rs13163728	1.00[ASN][1000 genomes]
rs13166025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13171066	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13178154	1.00[ASN][1000 genomes]
rs13189041	1.00[ASN][1000 genomes]
rs13355030	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34143432	1.00[ASN][1000 genomes]
rs34628154	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34765373	1.00[ASN][1000 genomes]
rs35222537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71621764	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71621765	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71621766	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71621767	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71621768	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71621770	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3528360	chr5:29069255-29548659	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	esv3528361	chr5:29069255-29548659	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv1016603	chr5:29102713-29843965	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	nsv537712	chr5:29102713-29843965	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
5	nsv1031329	chr5:29177677-29760923	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv537713	chr5:29177677-29760923	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv880414	chr5:29194872-29495564	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv881552	chr5:29219030-29466930	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv1024756	chr5:29220387-29501672	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
10	esv3369070	chr5:29247195-29250293	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:29248600-29249400	Weak transcription	Hela-S3	cervix

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