Variant report

Variant	rs34854984
Chromosome Location	chr14:68578127-68578128
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68574384..68576780-chr14:68577094..68579795,2	MCF-7	breast:
2	chr14:68569325..68572968-chr14:68576089..68579365,3	MCF-7	breast:
3	chr14:68573827..68576752-chr14:68577004..68581266,3	MCF-7	breast:
4	chr14:68575893..68578427-chr14:69259534..69262485,2	MCF-7	breast:
5	chr14:68577333..68579172-chr14:68579200..68581367,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs34743060	1.00[AMR][1000 genomes]
rs34786245	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68569000-68578400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:68569200-68579200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr14:68571800-68580200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr14:68572000-68580200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr14:68573600-68579400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr14:68573600-68580200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr14:68573800-68578400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr14:68573800-68578400	Weak transcription	NHEK	skin
9	chr14:68573800-68591800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr14:68575200-68580800	Enhancers	NHDF-Ad	bronchial
11	chr14:68575800-68578200	Enhancers	Fetal Lung	lung
12	chr14:68575800-68578600	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr14:68575800-68578800	Enhancers	Rectal Smooth Muscle	rectum
14	chr14:68575800-68579400	Enhancers	Fetal Stomach	stomach
15	chr14:68575800-68579600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr14:68575800-68579600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr14:68576000-68578800	Enhancers	Adipose Nuclei	Adipose
18	chr14:68576000-68579000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr14:68576000-68580800	Enhancers	Fetal Intestine Large	intestine
20	chr14:68576000-68581000	Enhancers	Fetal Intestine Small	intestine
21	chr14:68576200-68578600	Enhancers	Primary hematopoietic stem cells	blood
22	chr14:68576200-68579400	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr14:68576200-68580000	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr14:68576400-68578400	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr14:68576400-68578800	Enhancers	Pancreatic Islets	Pancreatic Islet
26	chr14:68576400-68580200	Weak transcription	Osteobl	bone
27	chr14:68576400-68592000	Weak transcription	Psoas Muscle	Psoas
28	chr14:68576600-68578800	Enhancers	Dnd41	blood
29	chr14:68576600-68580000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr14:68576600-68580200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr14:68576800-68579400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr14:68577200-68578200	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr14:68577200-68578400	Weak transcription	Fetal Thymus	thymus
34	chr14:68577200-68578600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr14:68577200-68579000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
36	chr14:68577400-68578400	Enhancers	HepG2	liver
37	chr14:68577400-68579000	Enhancers	A549	lung
38	chr14:68577400-68581000	Enhancers	Fetal Kidney	kidney
39	chr14:68577600-68578400	Enhancers	Primary T helper cells fromperipheralblood	blood
40	chr14:68577600-68578600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr14:68577600-68578600	Enhancers	Primary T killer memory cells from peripheral blood	blood
42	chr14:68577600-68578800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
43	chr14:68577600-68578800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
44	chr14:68577800-68578200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
45	chr14:68577800-68578800	Enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr14:68577800-68578800	Enhancers	GM12878-XiMat	blood
47	chr14:68577800-68579000	Enhancers	Fetal Brain Female	brain
48	chr14:68577800-68579400	Enhancers	Cortex derived primary cultured neurospheres	brain
49	chr14:68577800-68579400	Enhancers	Brain Germinal Matrix	brain
50	chr14:68577800-68579400	Enhancers	Fetal Muscle Leg	muscle

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