Variant report

Variant	rs34856015
Chromosome Location	chr8:105771824-105771825
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SMC3	chr8:105771739-105772288	K562	blood:	n/a	chr8:105772102-105772116 chr8:105772102-105772112
2	RAD21	chr8:105771714-105772498	SK-N-SH	brain:	n/a	chr8:105772098-105772117
3	RAD21	chr8:105771813-105772454	MCF-7	breast:	n/a	chr8:105772098-105772117
4	CEBPB	chr8:105771785-105772361	MCF-7	breast:	n/a	n/a
5	SMC3	chr8:105771288-105772537	SK-N-SH	brain:	n/a	chr8:105772102-105772116 chr8:105772102-105772112
6	CEBPB	chr8:105771796-105772261	K562	blood:	n/a	n/a
7	CTCF	chr8:105771733-105771825	A549	lung:	n/a	n/a
8	CTCF	chr8:105771720-105771870	AG04449	skin:	n/a	n/a
9	CEBPB	chr8:105771800-105772329	A549	lung:	n/a	n/a
10	CEBPB	chr8:105771794-105772280	MCF-7	breast:	n/a	n/a
11	CTCF	chr8:105771719-105772405	MCF-7	breast:	n/a	chr8:105772103-105772113 chr8:105772095-105772116 chr8:105772102-105772115 chr8:105772101-105772117 chr8:105772100-105772118 chr8:105772075-105772083 chr8:105772106-105772115
12	CTCF	chr8:105771635-105772477	MCF-7	breast:	n/a	chr8:105772103-105772113 chr8:105772095-105772116 chr8:105772102-105772115 chr8:105772101-105772117 chr8:105772100-105772118 chr8:105772075-105772083 chr8:105772106-105772115
13	RAD21	chr8:105771818-105772404	HCT-116	colon:	n/a	chr8:105772098-105772117
14	CTCF	chr8:105771657-105772351	K562	blood:	n/a	chr8:105772103-105772113 chr8:105772095-105772116 chr8:105772102-105772115 chr8:105772101-105772117 chr8:105772100-105772118 chr8:105772075-105772083 chr8:105772106-105772115
15	CTCF	chr8:105771647-105772451	HCT-116	colon:	n/a	chr8:105772103-105772113 chr8:105772095-105772116 chr8:105772102-105772115 chr8:105772101-105772117 chr8:105772100-105772118 chr8:105772075-105772083 chr8:105772106-105772115
16	RAD21	chr8:105771805-105772270	H1-hESC	embryonic stem cell:	n/a	chr8:105772098-105772117
17	CTCF	chr8:105771664-105772316	K562	blood:	n/a	chr8:105772103-105772113 chr8:105772095-105772116 chr8:105772102-105772115 chr8:105772101-105772117 chr8:105772100-105772118 chr8:105772075-105772083 chr8:105772106-105772115
18	CTCF	chr8:105771790-105772380	K562	blood:	n/a	chr8:105772103-105772113 chr8:105772095-105772116 chr8:105772102-105772115 chr8:105772101-105772117 chr8:105772100-105772118 chr8:105772075-105772083 chr8:105772106-105772115
19	RAD21	chr8:105771776-105772402	MCF-7	breast:	n/a	chr8:105772098-105772117
20	RAD21	chr8:105771779-105772352	A549	lung:	n/a	chr8:105772098-105772117
21	RAD21	chr8:105771817-105772417	HCT-116	colon:	n/a	chr8:105772098-105772117
22	CTCF	chr8:105771664-105772651	SK-N-SH	brain:	n/a	chr8:105772103-105772113 chr8:105772095-105772116 chr8:105772102-105772115 chr8:105772101-105772117 chr8:105772100-105772118 chr8:105772075-105772083 chr8:105772106-105772115
23	FOXM1	chr8:105771722-105772375	GM12878	blood:	n/a	n/a
24	CTCF	chr8:105771777-105772344	HepG2	liver:	n/a	chr8:105772103-105772113 chr8:105772095-105772116 chr8:105772102-105772115 chr8:105772101-105772117 chr8:105772100-105772118 chr8:105772075-105772083 chr8:105772106-105772115
25	CTCF	chr8:105771601-105772549	HCT-116	colon:	n/a	chr8:105772103-105772113 chr8:105772095-105772116 chr8:105772102-105772115 chr8:105772101-105772117 chr8:105772100-105772118 chr8:105772075-105772083 chr8:105772106-105772115
26	CTCF	chr8:105771739-105772374	T-47D	breast:	n/a	chr8:105772103-105772113 chr8:105772095-105772116 chr8:105772102-105772115 chr8:105772101-105772117 chr8:105772100-105772118 chr8:105772075-105772083 chr8:105772106-105772115
27	CTCF	chr8:105771564-105772600	A549	lung:	n/a	chr8:105772103-105772113 chr8:105772095-105772116 chr8:105772102-105772115 chr8:105772101-105772117 chr8:105772100-105772118 chr8:105772075-105772083 chr8:105772106-105772115
28	JUN	chr8:105771513-105772464	K562	blood:	n/a	n/a
29	RAD21	chr8:105771784-105772286	H1-hESC	embryonic stem cell:	n/a	chr8:105772098-105772117

No.	Distal block	Cell Line	Cell type
1	chr8:105651107..105651994-chr8:105771662..105772533,2	MCF-7	breast:
2	chr20:53424365..53424886-chr8:105771636..105772215,2	MCF-7	breast:
3	chr8:105528352..105529138-chr8:105771679..105772480,2	MCF-7	breast:
4	chr8:105698070..105699290-chr8:105771590..105772599,9	MCF-7	breast:
5	chr8:105771430..105772532-chr8:105788680..105789628,8	MCF-7	breast:
6	chr8:105523437..105529379-chr8:105769112..105773532,5	K562	blood:
7	chr8:105698340..105699300-chr8:105771692..105773095,3	K562	blood:
8	chr8:105504212..105505135-chr8:105771631..105772165,4	K562	blood:
9	chr8:105525658..105529400-chr8:105771015..105773532,3	K562	blood:
10	chr8:105700453..105701349-chr8:105771622..105772578,6	MCF-7	breast:
11	chr8:105524221..105525522-chr8:105771511..105772856,9	MCF-7	breast:
12	chr8:105765566..105767323-chr8:105770282..105773574,4	K562	blood:
13	chr8:105524454..105525567-chr8:105771506..105772753,15	K562	blood:
14	chr6:58776711..58777237-chr8:105771574..105772190,2	MCF-7	breast:
15	chr8:105702361..105702888-chr8:105771733..105772593,2	MCF-7	breast:
16	chr8:105700469..105701532-chr8:105771552..105773048,14	MCF-7	breast:
17	chr8:105700460..105701094-chr8:105771649..105772542,2	K562	blood:
18	chr8:105771642..105772528-chr8:106784928..106785818,2	MCF-7	breast:
19	chr8:105524457..105526235-chr8:105771233..105774016,35	MCF-7	breast:
20	chr8:105771627..105772511-chr8:105788720..105789658,4	MCF-7	breast:
21	chr18:2688516..2689036-chr8:105771673..105772344,2	MCF-7	breast:
22	chr8:105729977..105730799-chr8:105771608..105772208,3	MCF-7	breast:
23	chr8:105690620..105691387-chr8:105771785..105772501,2	MCF-7	breast:
24	chr8:105698341..105699380-chr8:105771233..105772916,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000263732	TF binding region
ENSG00000101596	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1000420	0.84[EUR][1000 genomes]
rs1000421	0.84[EUR][1000 genomes]
rs10086996	0.84[EUR][1000 genomes]
rs10087624	0.81[EUR][1000 genomes]
rs10087797	0.81[EUR][1000 genomes]
rs10101771	0.84[EUR][1000 genomes]
rs10102865	0.84[EUR][1000 genomes]
rs10107275	0.84[EUR][1000 genomes]
rs10481103	0.81[EUR][1000 genomes]
rs12542435	0.84[EUR][1000 genomes]
rs13261603	0.81[EUR][1000 genomes]
rs13273368	0.81[EUR][1000 genomes]
rs13274855	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16871782	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1992212	0.86[EUR][1000 genomes]
rs2118601	0.84[EUR][1000 genomes]
rs2118602	0.84[EUR][1000 genomes]
rs2118603	0.83[EUR][1000 genomes]
rs2164929	0.84[EUR][1000 genomes]
rs28488458	0.83[EUR][1000 genomes]
rs34365221	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34485812	0.84[EUR][1000 genomes]
rs35144052	0.86[EUR][1000 genomes]
rs3847143	0.83[EUR][1000 genomes]
rs4392866	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4734112	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4734808	0.83[EUR][1000 genomes]
rs4734810	0.83[EUR][1000 genomes]
rs6994940	0.81[EUR][1000 genomes]
rs6999308	0.81[EUR][1000 genomes]
rs7009228	0.84[EUR][1000 genomes]
rs71522715	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs718635	0.86[EUR][1000 genomes]
rs9297348	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1026754	chr8:105382508-106030916	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv539709	chr8:105382508-106030916	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv1032476	chr8:105609904-106030916	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv539710	chr8:105609904-106030916	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv465754	chr8:105764528-105878832	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	n/a
7	nsv611836	chr8:105764528-105878832	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105770800-105772000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr8:105770800-105772400	Enhancers	K562	blood
3	chr8:105771000-105772400	Enhancers	Dnd41	blood
4	chr8:105771200-105772000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr8:105771400-105772000	Enhancers	Fetal Thymus	thymus

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