Variant report

Variant	rs34856936
Chromosome Location	chr11:8953721-8953722
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8952591..8954220-chr11:8962798..8964669,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ASCL3-1	chr11:8953689-8953873	NONHSAT017890
2	lnc-ASCL3-1	chr11:8953689-8953873	NONHSAT017891

Variant related genes	Relation type
ENSG00000176009	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12574497	0.84[EUR][1000 genomes]
rs16906231	0.94[EUR][1000 genomes]
rs2455603	0.94[EUR][1000 genomes]
rs2653598	0.91[EUR][1000 genomes]
rs2742499	0.91[EUR][1000 genomes]
rs35131475	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59314648	0.94[EUR][1000 genomes]
rs60771192	0.91[EUR][1000 genomes]
rs61730186	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72549208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72550808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7949740	0.97[EUR][1000 genomes]
rs7950777	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758256	chr11:8784813-9009573	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv2759803	chr11:8784813-9009573	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv435923	chr11:8839325-9000602	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv832062	chr11:8849295-9009472	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8936600-8954000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr11:8941200-8956200	Weak transcription	K562	blood
3	chr11:8942400-8959000	Weak transcription	Fetal Kidney	kidney
4	chr11:8943800-8969200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr11:8944200-8956400	Weak transcription	HUVEC	blood vessel
6	chr11:8944600-8985000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:8944800-8954000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr11:8944800-8956400	Weak transcription	Fetal Intestine Large	intestine
9	chr11:8945000-8954000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr11:8945000-8954000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr11:8945000-8955000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr11:8945000-8956200	Weak transcription	NH-A	brain
13	chr11:8945200-8954000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr11:8945200-8954400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr11:8945200-8956200	Weak transcription	A549	lung
16	chr11:8945800-8954800	Weak transcription	Hela-S3	cervix
17	chr11:8945800-8974000	Weak transcription	Colon Smooth Muscle	Colon
18	chr11:8946400-8956200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:8947000-8954400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr11:8947000-8968800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr11:8947000-8977000	Weak transcription	Aorta	Aorta
22	chr11:8947200-8953800	Weak transcription	Fetal Muscle Leg	muscle
23	chr11:8947200-8956400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr11:8947400-8956200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr11:8947400-8969000	Weak transcription	Thymus	Thymus
26	chr11:8947600-8954200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr11:8947600-8956200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr11:8947600-8956400	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr11:8947600-8969000	Weak transcription	Brain Cingulate Gyrus	brain
30	chr11:8948000-8955600	Weak transcription	NHLF	lung
31	chr11:8948200-8953800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr11:8948200-8969000	Weak transcription	Fetal Brain Female	brain
33	chr11:8948600-8969200	Weak transcription	Gastric	stomach
34	chr11:8948600-8969200	Weak transcription	Stomach Smooth Muscle	stomach
35	chr11:8949000-8953800	Weak transcription	Fetal Muscle Trunk	muscle
36	chr11:8950200-8954800	Enhancers	Placenta	Placenta
37	chr11:8951000-8956200	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr11:8951200-8956200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr11:8951200-8974400	Weak transcription	HepG2	liver
40	chr11:8951400-8953800	Weak transcription	Esophagus	oesophagus
41	chr11:8951400-8954800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr11:8951400-8954800	Weak transcription	NHEK	skin
43	chr11:8952200-8954000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr11:8952600-8954200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr11:8952600-8955200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr11:8952600-8956200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
47	chr11:8952600-8957200	Weak transcription	Spleen	Spleen
48	chr11:8952600-8975800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr11:8952800-8954600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr11:8952800-8955200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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