Variant report

Variant	rs34865085
Chromosome Location	chr6:149208809-149208810
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149194314..149196748-chr6:149207020..149209121,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13203102	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13208529	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13213395	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13214203	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35738720	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71568263	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032690	chr6:149206106-149398712	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149193200-149218800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr6:149195200-149210200	Weak transcription	Right Ventricle	heart
3	chr6:149196400-149209800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr6:149199400-149215600	Weak transcription	Spleen	Spleen
5	chr6:149201000-149210200	Weak transcription	Aorta	Aorta
6	chr6:149203200-149209600	Weak transcription	Fetal Heart	heart
7	chr6:149203400-149210200	Weak transcription	Fetal Thymus	thymus
8	chr6:149203400-149213400	Weak transcription	Dnd41	blood
9	chr6:149204600-149210800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr6:149204800-149210400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr6:149205400-149211200	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr6:149205600-149209400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:149205600-149209600	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr6:149205800-149209000	Enhancers	Osteobl	bone
15	chr6:149205800-149209400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr6:149206000-149210800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:149206000-149212600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:149206200-149210600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:149206200-149212600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:149206400-149209000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:149206400-149210000	Weak transcription	Stomach Smooth Muscle	stomach
22	chr6:149206400-149210000	Weak transcription	HSMMtube	muscle
23	chr6:149206400-149211000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr6:149206400-149211800	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr6:149206400-149212400	Enhancers	Fetal Muscle Leg	muscle
26	chr6:149207200-149210200	Weak transcription	Stomach Mucosa	stomach
27	chr6:149207200-149210200	Weak transcription	Hela-S3	cervix
28	chr6:149207200-149210400	Enhancers	Brain Anterior Caudate	brain
29	chr6:149207400-149209800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr6:149207400-149209800	Weak transcription	Fetal Brain Female	brain
31	chr6:149207400-149210000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr6:149207400-149211000	Enhancers	Colon Smooth Muscle	Colon
33	chr6:149207400-149211000	Weak transcription	NHDF-Ad	bronchial
34	chr6:149207400-149211400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr6:149207400-149214800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:149207600-149209000	Enhancers	Brain Hippocampus Middle	brain
37	chr6:149207600-149210200	Strong transcription	Primary B cells from cord blood	blood
38	chr6:149207800-149209000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr6:149207800-149209000	Enhancers	NHEK	skin
40	chr6:149207800-149219400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr6:149207800-149221400	Weak transcription	Primary hematopoietic stem cells	blood
42	chr6:149207800-149237400	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr6:149208000-149209000	Enhancers	HMEC	breast
44	chr6:149208000-149217200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr6:149208000-149229800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr6:149208200-149210000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr6:149208200-149210000	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr6:149208200-149210200	Strong transcription	HUES48 Cell Line	embryonic stem cell
49	chr6:149208200-149210200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr6:149208400-149209000	Genic enhancers	HUES64 Cell Line	embryonic stem cell

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