Variant report

Variant	rs34866590
Chromosome Location	chr11:10623319-10623320
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:10594420..10597272-chr11:10621485..10623481,2	K562	blood:
2	chr11:10617278..10621445-chr11:10622664..10626512,4	K562	blood:
3	chr11:10618512..10620959-chr11:10622664..10624993,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs35487464	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7111477	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv832063	chr11:10618485-10785281	ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10595000-10629600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:10595000-10632800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:10597200-10625800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr11:10607400-10626000	Weak transcription	Fetal Lung	lung
5	chr11:10608800-10625400	Weak transcription	Adipose Nuclei	Adipose
6	chr11:10611600-10625000	Weak transcription	Brain Substantia Nigra	brain
7	chr11:10615000-10625600	Weak transcription	Osteobl	bone
8	chr11:10615200-10625600	Weak transcription	NHDF-Ad	bronchial
9	chr11:10615800-10625600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:10616800-10625400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:10616800-10625400	Weak transcription	HMEC	breast
12	chr11:10617400-10623400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr11:10617600-10626800	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr11:10617600-10627600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:10619200-10625400	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr11:10620200-10635800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr11:10620400-10623600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
18	chr11:10620400-10630000	Enhancers	Fetal Muscle Leg	muscle
19	chr11:10620400-10630200	Enhancers	Fetal Thymus	thymus
20	chr11:10620600-10623600	Enhancers	Psoas Muscle	Psoas
21	chr11:10620800-10626400	Enhancers	Placenta	Placenta
22	chr11:10621000-10623800	Enhancers	Placenta Amnion	Placenta Amnion
23	chr11:10621000-10626400	Enhancers	Fetal Muscle Trunk	muscle
24	chr11:10621200-10623800	Enhancers	HSMMtube	muscle
25	chr11:10621200-10625800	Strong transcription	NHLF	lung
26	chr11:10621200-10627400	Weak transcription	Brain Anterior Caudate	brain
27	chr11:10621400-10623400	Weak transcription	Primary hematopoietic stem cells	blood
28	chr11:10621400-10623400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr11:10621400-10625800	Weak transcription	Fetal Intestine Large	intestine
30	chr11:10621400-10626000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr11:10621600-10623400	Weak transcription	Right Ventricle	heart
32	chr11:10621600-10623600	Genic enhancers	Stomach Smooth Muscle	stomach
33	chr11:10621600-10625200	Weak transcription	NHEK	skin
34	chr11:10621600-10625400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr11:10621600-10625600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr11:10621800-10625600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr11:10622000-10623400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr11:10622000-10625200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr11:10622000-10625600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr11:10622200-10624200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
41	chr11:10622200-10624600	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr11:10622200-10624800	Genic enhancers	Spleen	Spleen
43	chr11:10622200-10625600	Strong transcription	Fetal Intestine Small	intestine
44	chr11:10622200-10627200	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr11:10622400-10623400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr11:10622400-10623400	Genic enhancers	Rectal Smooth Muscle	rectum
47	chr11:10622400-10623400	Weak transcription	Right Atrium	heart
48	chr11:10622400-10626000	Strong transcription	Colon Smooth Muscle	Colon
49	chr11:10622400-10627400	Enhancers	Primary B cells from peripheral blood	blood
50	chr11:10622400-10629200	Strong transcription	Aorta	Aorta

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